RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SP1P08047 785 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 ADCYAP1P18509 176 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 IFT22Q9H7X7 185 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 MTCH1Q9NZJ7 389 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 PRRC2CQ9Y520 2896 aaKnown RBP11.49□□□□□ -0.57
CCDC3-202ENST00000378839 DMXL1Q9Y485 3027 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 H7C2Y5 167 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 WNT5AP41221 380 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 PLEKHN1Q494U1 663 aaPredicted RBP11.49□□□□□ -0.57
CCDC3-202ENST00000378839 HIKESHIQ53FT3 197 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 RPL7L1Q6DKI1 246 aaKnown RBP11.49□□□□□ -0.57
CCDC3-202ENST00000378839 ZNF585AQ6P3V2 769 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 LYZL2Q7Z4W2 148 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 VASH2Q86V25 355 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 CNTNAP3BQ96NU0 1288 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 CNTNAP3Q9BZ76 1288 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 OR7C1O76099 320 aaPredicted RBP11.49□□□□□ -0.57
CCDC3-202ENST00000378839 ZNF728P0DKX0 622 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 RBMXP38159 391 aaKnown RBP11.49□□□□□ -0.57
CCDC3-202ENST00000378839 KCNJ3P48549 501 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 SRSF6Q13247 344 aaKnown RBP11.49□□□□□ -0.57
CCDC3-202ENST00000378839 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.49□□□□□ -0.57
CCDC3-202ENST00000378839 SGPP2Q8IWX5 399 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 LINC00469Q8N7U9 141 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 Q8NFD4 153 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 CPNE2Q96FN4 548 aaPredicted RBP11.49□□□□□ -0.57
CCDC3-202ENST00000378839 POM121L2Q96KW2 1035 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 GPHA2Q96T91 129 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 OR2S2Q9NQN1 319 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 C1orf123Q9NWV4 160 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 BET1O15155 118 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 NME2P1O60361 137 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 IL18BPO95998 194 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 NME2P22392 152 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 AADACP22760 399 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 DUSP1P28562 367 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 HAAOP46952 286 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 RAB1AP62820 205 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 PLGLB1Q02325 96 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 MYPOPQ86VE0 399 aaPredicted RBP11.48□□□□□ -0.57
CCDC3-202ENST00000378839 OR4A4PQ8NGN8 299 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 ZNF488Q96MN9 340 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 DEFB127Q9H1M4 99 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 TMEM231Q9H6L2 316 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 C12orf49Q9H741 205 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 RYDENQ9NUL5 291 aaKnown RBP11.48□□□□□ -0.57
CCDC3-202ENST00000378839 SPRR3Q9UBC9 169 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 B4GALT7Q9UBV7 327 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 TUBD1Q9UJT1 453 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 PRELID3BQ9Y3B1 194 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 SYNGR1O43759 233 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 TPT1P13693 172 aaKnown RBP11.48□□□□□ -0.57
CCDC3-202ENST00000378839 NAAAQ02083 359 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 CLRN3Q8NCR9 226 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 OR5L1Q8NGL2 311 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 GLYATL2Q8WU03 294 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 RTN4IP1Q8WWV3 396 aaPredicted RBP11.48□□□□□ -0.57
CCDC3-202ENST00000378839 OR51B6Q9H340 312 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 NAA60Q9H7X0 242 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 SLC2A9Q9NRM0 540 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 ZDHHC8Q9ULC8 765 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 AMDHD2Q9Y303 409 aa11.48□□□□□ -0.57
CCDC3-202ENST00000378839 ARHGAP21Q5T5U3 1957 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 NDUFS6O75380 124 aaKnown RBP11.47□□□□□ -0.57
CCDC3-202ENST00000378839 NUBP1P53384 320 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 AIMP2Q13155 320 aaKnown RBP11.47□□□□□ -0.57
CCDC3-202ENST00000378839 TMEM164Q5U3C3 297 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 MSI2Q96DH6 328 aaKnown RBP11.47□□□□□ -0.57
CCDC3-202ENST00000378839 ESRP2Q9H6T0 727 aaKnown RBP11.47□□□□□ -0.57
CCDC3-202ENST00000378839 PARPBPQ9NWS1 579 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 RAB19A4D1S5 217 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 ZNF724A8MTY0 619 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 HSPB6O14558 160 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 DEDDO75618 318 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 SYNGR4O95473 234 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 MBPP02686 304 aaPredicted RBP11.47□□□□□ -0.57
CCDC3-202ENST00000378839 FUT3P21217 361 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 MALLQ13021 153 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 HERPUD1Q15011 391 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 TMPRSS7Q7RTY8 843 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 ERGIC1Q969X5 290 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 APH1AQ96BI3 265 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 C18orf12Q96KH6 178 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 LDAHQ9H6V9 325 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 ZNF442Q9H7R0 627 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 ZNF732B4DXR9 585 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 DNASE2O00115 360 aaPredicted RBP11.47□□□□□ -0.57
CCDC3-202ENST00000378839 ABCD4O14678 606 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 TSC22D1Q15714 1073 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 HAGHLQ6PII5 290 aaPredicted RBP11.47□□□□□ -0.57
CCDC3-202ENST00000378839 OR52M1Q8NGK5 317 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 MOB3AQ96BX8 217 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 TP53RKQ96S44 253 aa11.47□□□□□ -0.57
CCDC3-202ENST00000378839 TNRC6AQ8NDV7 1962 aaKnown RBP11.46□□□□□ -0.57
CCDC3-202ENST00000378839 SCTP09683 121 aa11.46□□□□□ -0.57
CCDC3-202ENST00000378839 ID4P47928 161 aa11.46□□□□□ -0.57
CCDC3-202ENST00000378839 C20orf204Q6ZNR8 217 aa11.46□□□□□ -0.57
CCDC3-202ENST00000378839 EXTL1Q92935 676 aa11.46□□□□□ -0.57
CCDC3-202ENST00000378839 TSNAXQ99598 290 aaKnown RBP11.46□□□□□ -0.57
CCDC3-202ENST00000378839 LSM5Q9Y4Y9 91 aaKnown RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms