RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 AICDAQ9GZX7 198 aa13.02□□□□□ -0.32
COL17A1-201ENST00000353479 GPR27Q9NS67 375 aa13.02□□□□□ -0.32
COL17A1-201ENST00000353479 ANKRD20A5PA0PJZ0 165 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 KRBOX1C9JBD0 128 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 TGFBR3LH3BV60 316 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 FGF7P21781 194 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 UBE2G1P62253 170 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 ADAM5Q6NVV9 412 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 TIPARPQ7Z3E1 657 aaKnown RBP13.02□□□□□ -0.33
COL17A1-201ENST00000353479 C15orf54Q8N8G6 183 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 C17orf50Q8WW18 174 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 MAP6Q96JE9 813 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 SIRT4Q9Y6E7 314 aaPredicted RBP13.02□□□□□ -0.33
COL17A1-201ENST00000353479 TRDCB7Z8K6 153 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 SRP14P37108 136 aaKnown RBP13.02□□□□□ -0.33
COL17A1-201ENST00000353479 CSN1S1P47710 185 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 UCP2P55851 309 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 BPIFB3P59826 476 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 ARL16Q0P5N6 197 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 MUC20Q8N307 709 aaPredicted RBP13.02□□□□□ -0.33
COL17A1-201ENST00000353479 GINS3Q9BRX5 216 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 ANXA10Q9UJ72 324 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 CHD5Q8TDI0 1954 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 SSTP61278 116 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 RPS4XP62701 263 aaKnown RBP13.02□□□□□ -0.33
COL17A1-201ENST00000353479 SLC25A47Q6Q0C1 308 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 TMEM123Q8N131 208 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 ZCCHC14Q8WYQ9 949 aaKnown RBP13.02□□□□□ -0.33
COL17A1-201ENST00000353479 SIGLEC12Q96PQ1 595 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 GSX2Q9BZM3 304 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 NAA60Q9H7X0 242 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 C19orf12Q9NSK7 152 aa13.02□□□□□ -0.33
COL17A1-201ENST00000353479 AMMECR1Q9Y4X0 333 aaPredicted RBP13.02□□□□□ -0.33
COL17A1-201ENST00000353479 IGKV1D-42A0A075B6H8 117 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 RELL2Q8NC24 303 aaPredicted RBP13.01□□□□□ -0.33
COL17A1-201ENST00000353479 LHX4Q969G2 390 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 TMEM56Q96MV1 263 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 NMES1Q9C002 83 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 ZNF665Q9H7R5 613 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 UBE2L5PA0A1B0GUS4 154 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 A0A1W2PNV4 684 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 OOEPA6NGQ2 149 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 LINC00271P0C7V0 271 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 VSIG8P0DPA2 414 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 CCL8P80075 99 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 ST3GAL2Q16842 350 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 ZNF488Q96MN9 340 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 AMELYQ99218 206 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 TMED3Q9Y3Q3 217 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 TRAV39A0A0B4J263 110 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 OR5AC1P0C628 307 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 COX5AP20674 150 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 TGM1P22735 817 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 CTSSP25774 331 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 RBPMSQ93062 196 aaKnown RBP13.01□□□□□ -0.33
COL17A1-201ENST00000353479 MOB3AQ96BX8 217 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 C9orf170A2RU37 121 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 TMEM210A6NLX4 147 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 CRYBA1P05813 215 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 CEACAM3P40198 252 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 BAP18Q8IXM2 172 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 ZNF485Q8NCK3 441 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 SLC25A32Q9H2D1 315 aa13.01□□□□□ -0.33
COL17A1-201ENST00000353479 IGKV3D-11A0A0A0MRZ8 115 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 CRYZL1O95825 349 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 PMELP40967 661 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 HABP2Q14520 560 aaPredicted RBP13□□□□□ -0.33
COL17A1-201ENST00000353479 TNFRSF19Q9NS68 423 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 IL36GQ9NZH8 169 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 CYB5R1Q9UHQ9 305 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 SPINK9Q5DT21 86 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 ZFP82Q8N141 532 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 ADAMTS17Q8TE56 1095 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 DYRK2Q92630 601 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 RFPL3SP0C7P2 107 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 MRPS11P82912 194 aaKnown RBP13□□□□□ -0.33
COL17A1-201ENST00000353479 TMEM267Q0VDI3 215 aaPredicted RBP13□□□□□ -0.33
COL17A1-201ENST00000353479 SSX2Q16385 188 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 TMEM171Q8WVE6 324 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 SOX7Q9BT81 388 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 CTNNBIP1Q9NSA3 81 aaPredicted RBP13□□□□□ -0.33
COL17A1-201ENST00000353479 NYNRINQ9P2P1 1898 aaKnown RBP13□□□□□ -0.33
COL17A1-201ENST00000353479 IGLV1-36A0A0B4J1U3 117 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 RFPL4AA6NLU0 287 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 RFPL4AL1F8VTS6 287 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 COX7A2P2O60397 106 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 OPN1MWP04001 364 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 OPN1MW2P0DN77 364 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 OPN1MW3P0DN78 364 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 TAGLN2P37802 199 aaKnown RBP13□□□□□ -0.33
COL17A1-201ENST00000353479 HOXA6P31267 233 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 C11orf87Q6NUJ2 197 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 C20orf24Q9BUV8 137 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 CACNG5Q9UF02 275 aa13□□□□□ -0.33
COL17A1-201ENST00000353479 ZSWIM8A7E2V4 1837 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 CACNA1IQ9P0X4 2223 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 FLI1Q01543 452 aaPredicted RBP12.99□□□□□ -0.33
COL17A1-201ENST00000353479 OR4F5Q8NH21 305 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 ASB13Q8WXK3 278 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 MISP3Q96FF7 219 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms