RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 FGF8P55075 233 aaPredicted RBP10.42□□□□□ -0.74
USP1-201ENST00000339950 RNF212Q495C1 297 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 C5orf46Q6UWT4 87 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 MKXQ8IYA7 352 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 RPS4Y2Q8TD47 263 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 KIRREL1Q96J84 757 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 NOTCH3Q9UM47 2321 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 A0A1W2PQD3 144 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 ZNF732B4DXR9 585 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 TRAPPC2LH3BP13 241 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 AADACL3Q5VUY0 350 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 PSMF1Q92530 271 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 GAR1Q9NY12 217 aaKnown RBP10.42□□□□□ -0.74
USP1-201ENST00000339950 ZNF92Q03936 586 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 TMEM267Q0VDI3 215 aaPredicted RBP10.42□□□□□ -0.74
USP1-201ENST00000339950 CNN3Q15417 329 aaKnown RBP10.42□□□□□ -0.74
USP1-201ENST00000339950 ZNF705AQ6ZN79 300 aaPredicted RBP10.42□□□□□ -0.74
USP1-201ENST00000339950 ZDHHC22Q8N966 263 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 DTWD2Q8NBA8 298 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 OR1K1Q8NGR3 316 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 CPT1CQ8TCG5 803 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 SRXN1Q9BYN0 137 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 NECAP2Q9NVZ3 263 aa10.42□□□□□ -0.74
USP1-201ENST00000339950 ZNF724A8MTY0 619 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 TERTO14746 1132 aaKnown RBP10.41□□□□□ -0.74
USP1-201ENST00000339950 ST8SIA3O43173 380 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 AADACP22760 399 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 F2RL1P55085 397 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 RAB11AP62491 216 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 PJVKQ0ZLH3 352 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 EDDM3AQ14507 147 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 TFAP2EQ6VUC0 442 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 OSR2Q8N2R0 312 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 LILRB2Q8N423 598 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 LINC00469Q8N7U9 141 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 OR1F12Q8NHA8 337 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 ALX4Q9H161 411 aaPredicted RBP10.41□□□□□ -0.74
USP1-201ENST00000339950 GNG13Q9P2W3 67 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 GPR132Q9UNW8 380 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 ARFGEF3Q5TH69 2177 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 CEP295Q9C0D2 2601 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 ZNF727A8MUV8 499 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 CELA3AP09093 270 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 CD37P11049 281 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 NKX2-1P43699 371 aaPredicted RBP10.41□□□□□ -0.74
USP1-201ENST00000339950 FOXG1P55316 489 aaPredicted RBP10.41□□□□□ -0.74
USP1-201ENST00000339950 C1orf100Q5SVJ3 147 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 ARRDC1Q8N5I2 433 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 OR52M1Q8NGK5 317 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 OR6X1Q8NH79 312 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 SCGB1C1Q8TD33 95 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 CPNE4Q96A23 557 aaPredicted RBP10.41□□□□□ -0.74
USP1-201ENST00000339950 ANXA10Q9UJ72 324 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 USF3Q68DE3 2245 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 FPR2P25090 351 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 S100GP29377 79 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 FAM189A2Q15884 450 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 AWAT1Q58HT5 328 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 RPUSD3Q6P087 351 aaKnown RBP10.41□□□□□ -0.74
USP1-201ENST00000339950 FIP1L1Q6UN15 594 aaKnown RBP10.41□□□□□ -0.74
USP1-201ENST00000339950 EXTL1Q92935 676 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 IP6K3Q96PC2 410 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 ZNF251Q9BRH9 671 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 TRAPPC2LQ9UL33 140 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 ADAM20O43506 726 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 HOXA4Q00056 320 aaPredicted RBP10.41□□□□□ -0.74
USP1-201ENST00000339950 SSBP1Q04837 148 aaKnown RBP10.41□□□□□ -0.74
USP1-201ENST00000339950 ZNF239Q16600 458 aaKnown RBP10.41□□□□□ -0.74
USP1-201ENST00000339950 SPANXN5Q5MJ07 72 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 ATP1A1-AS1Q5TC04 95 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 PRSS54Q6PEW0 395 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 DEGS2Q6QHC5 323 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 HOGA1Q86XE5 327 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 THNSL2Q86YJ6 484 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 TPRX1Q8N7U7 411 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 INTS12Q96CB8 462 aaKnown RBP10.41□□□□□ -0.74
USP1-201ENST00000339950 OR5B12Q96R08 314 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 BCO1Q9HAY6 547 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 HDGFL3Q9Y3E1 203 aa10.41□□□□□ -0.74
USP1-201ENST00000339950 NKX2-6A6NCS4 301 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 PCNX2A6NKB5 2137 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 DEFB108AA8MXU0 73 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 EIF1BO60739 113 aaKnown RBP10.4□□□□□ -0.74
USP1-201ENST00000339950 CA6P23280 308 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 EIF2S3P41091 472 aaKnown RBP10.4□□□□□ -0.74
USP1-201ENST00000339950 SCAND1P57086 179 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 TMEM164Q5U3C3 297 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 DHRS13Q6UX07 377 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 FGFBP3Q8TAT2 258 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 ABHD14AQ9BUJ0 271 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 RNF126Q9BV68 326 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 AURKAIP1Q9NWT8 199 aaPredicted RBP10.4□□□□□ -0.74
USP1-201ENST00000339950 DNAJB11Q9UBS4 358 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 NGFP01138 241 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 DHODHQ02127 395 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 TUSC5Q8IXB3 177 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 SLC25A43Q8WUT9 341 aaPredicted RBP10.4□□□□□ -0.74
USP1-201ENST00000339950 TMEM230Q96A57 120 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 NIPSNAP3BQ9BS92 247 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 HS3ST3B1Q9Y662 390 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms