RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 A6NLC8 198 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 MCRIP1C9JLW8 97 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 TPD52L2O43399 206 aaKnown RBP11.36□□□□□ -0.59
HMGB1-202ENST00000339872 NXPH2O95156 264 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 C1QBP02746 253 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 ZNF250P15622 560 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 KLF3P57682 345 aaPredicted RBP11.36□□□□□ -0.59
HMGB1-202ENST00000339872 PRAMEF6Q5VXH4 476 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 TMEM108Q6UXF1 575 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 Q6ZPA2 131 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 ZNF431Q8TF32 576 aaPredicted RBP11.36□□□□□ -0.59
HMGB1-202ENST00000339872 SYT3Q9BQG1 590 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 NRIP2Q9BQI9 281 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 ZNF436Q9C0F3 470 aaPredicted RBP11.36□□□□□ -0.59
HMGB1-202ENST00000339872 ZNF286AQ9HBT8 521 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 SPACA1Q9HBV2 294 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 MYOZ1Q9NP98 299 aaPredicted RBP11.36□□□□□ -0.59
HMGB1-202ENST00000339872 PCNX1Q96RV3 2341 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 HS3ST1O14792 307 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 FABP7O15540 132 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 HLA-AP01891 365 aaKnown RBP11.36□□□□□ -0.59
HMGB1-202ENST00000339872 ZNF44P15621 663 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 ERVK11-1P61568 191 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 RPS23P62266 143 aaKnown RBP11.36□□□□□ -0.59
HMGB1-202ENST00000339872 ZNF826PQ6ZT77 177 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 SLC25A42Q86VD7 318 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 LHFPL1Q86WI0 220 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 SPERTQ8NA61 448 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 SUMF2Q8NBJ7 301 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 ADAD2Q8NCV1 583 aaKnown RBP11.36□□□□□ -0.59
HMGB1-202ENST00000339872 OR2Z1Q8NG97 314 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 TMEM171Q8WVE6 324 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 GTF3AQ92664 365 aaKnown RBP11.36□□□□□ -0.59
HMGB1-202ENST00000339872 RDH5Q92781 318 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 CA10Q9NS85 328 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 OSGIN2Q9Y236 505 aa11.36□□□□□ -0.59
HMGB1-202ENST00000339872 CADP27708 2225 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 MED19A0JLT2 244 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-202ENST00000339872 H3BUI4 141 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 SLC34A2O95436 690 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 IGHV3-13P01766 116 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 BAMBIQ13145 260 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 DHRS2Q13268 280 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 GRK1Q15835 563 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 AADACL3Q5VUY0 350 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 SPICQ8N5J4 248 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 ZNF486Q96H40 463 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-202ENST00000339872 CHIAQ9BZP6 476 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 UFSP2Q9NUQ7 469 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 NECAP2Q9NVZ3 263 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 TRAV24A0A0B4J272 114 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 THBDP07204 575 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 AKR1C4P17516 323 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 FPR2P25090 351 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 PPP1R1AQ13522 171 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 MPPED2Q15777 294 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 C11orf53Q8IXP5 236 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 POC1AQ8NBT0 407 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 OR2AK2Q8NG84 335 aa11.35□□□□□ -0.59
HMGB1-202ENST00000339872 ZNF2Q9BSG1 426 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-202ENST00000339872 A0A1B0GWJ7 208 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 PLSCR5A0PG75 271 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 OR5H14A6NHG9 310 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 ZSCAN5BA6NJL1 495 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 CCL21O00585 134 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 DEGS1O15121 323 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 OR5H8P0DN80 308 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 SFTPCP11686 197 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 GZMKP49863 264 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 FAM122AQ96E09 287 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 DPCDQ9BVM2 203 aaPredicted RBP11.34□□□□□ -0.59
HMGB1-202ENST00000339872 WDR13Q9H1Z4 485 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 DLL4Q9NR61 685 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 GPR132Q9UNW8 380 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 NPTNQ9Y639 398 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 CHD3Q12873 2000 aaKnown RBP11.34□□□□□ -0.59
HMGB1-202ENST00000339872 SPTA1P02549 2419 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 hCG_1807616A0A1W2PRN6 198 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 CEACAM18A8MTB9 384 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 SIRPB1O00241 398 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 GOSR2O14653 212 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 ABCD4O14678 606 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 ATXN7O15265 892 aaPredicted RBP11.34□□□□□ -0.59
HMGB1-202ENST00000339872 NAPSAO96009 420 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 PI3P19957 117 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 VAMP1P23763 118 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 PTAFRP25105 342 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 MZT1Q08AG7 82 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 Q6P435 159 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 WDR82Q6UXN9 313 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 NLRC3Q7RTR2 1065 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 LYG2Q86SG7 212 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 C12orf45Q8N5I9 185 aaPredicted RBP11.34□□□□□ -0.59
HMGB1-202ENST00000339872 SCGB3A2Q96PL1 93 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 TLNRD1Q9H1K6 362 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 C5orf66Q9H5L9 145 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 IFT22Q9H7X7 185 aa11.34□□□□□ -0.59
HMGB1-202ENST00000339872 CACNA1AO00555 2505 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 IGLV3-9A0A075B6K5 115 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 FAM172BPA6NC97 362 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms