RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 VWCEQ96DN2 955 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 CALHM2Q9HA72 323 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 PTRH2Q9Y3E5 179 aaKnown RBP3.65□□□□□ -1.83
NEDD4-201ENST00000338963 MYH13Q9UKX3 1938 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 A0A087WV62 115 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 A0A1W2PQM1 296 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 P2RY10O00398 339 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 CT45A6P0DMU7 189 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 CT45A5P0DMU8 189 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 CT45A7P0DMV0 189 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 HIST1H1EP10412 219 aaKnown RBP3.65□□□□□ -1.83
NEDD4-201ENST00000338963 ZNF708P17019 499 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 KIR2DS4P43632 304 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 ZNF90Q03938 601 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 IL15RAQ13261 267 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 INSL4Q14641 139 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 CT45A1Q5HYN5 189 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 LYRM7Q5U5X0 104 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 OLIG3Q7RTU3 272 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 ARHGEF39Q8N4T4 335 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 SCCPDHQ8NBX0 429 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 CT45A3Q8NHU0 189 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 SCRT1Q9BWW7 348 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 PILRBQ9UKJ0 227 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 ERG28Q9UKR5 140 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 SPCS1Q9Y6A9 102 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 MEIS3P2A8K0S8 358 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 PRR33A8MZF0 331 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 RAB29O14966 203 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 PRICKLE3O43900 615 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 CCR2P41597 374 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 FABP6P51161 128 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 TMEM177Q53S58 311 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 BOD1L2Q8IYS8 172 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 MARCH1Q8TCQ1 289 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 SLC25A43Q8WUT9 341 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 PTH2Q96A98 100 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 NEIL1Q96FI4 390 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 RTBDNQ9BSG5 229 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 MS4A5Q9H3V2 200 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 MSGN1A6NI15 193 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 CD300LBA8K4G0 201 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 PHF1O43189 567 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 NDUFB2O95178 105 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 TMEM50AO95807 157 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 TTRP02766 147 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ADH4P08319 380 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 CEBPBP17676 345 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 KLK2P20151 261 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 LHX2P50458 406 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 CRYBA2P53672 197 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 MFAP4P55083 255 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 PSG9Q00887 426 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 TIAL1Q01085 375 aaKnown RBP eCLIP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 BPIFA4PQ86YQ2 179 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 OR4X2Q8NGF9 303 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 OR6N2Q8NGY6 317 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 VSTM2AQ8TAG5 236 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 PELI1Q96FA3 418 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 GPR27Q9NS67 375 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 SIGLEC8Q9NYZ4 499 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 C1RLQ9NZP8 487 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ANXA10Q9UJ72 324 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ZNF214Q9UL59 606 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 TMED7Q9Y3B3 224 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 LAMB4A4D0S4 1761 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 GAGE12JA6NER3 117 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 F5H5K5 113 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 KLF4O43474 513 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 GAGE7O76087 117 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 GAGE12FP0CL80 117 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 GAGE12GP0CL81 117 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 GAGE12IP0CL82 117 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ATP1B2P14415 290 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 CD22P20273 847 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 SERF2P84101 59 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 MEF2BQ02080 365 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ROM1Q03395 351 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 GAGE4Q13068 117 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 LRRC75BQ2VPJ9 315 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 KCTD18Q6PI47 426 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 FOXI2Q6ZQN5 318 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 WFDC12Q8WWY7 111 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 DIO2Q92813 273 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ORAI3Q9BRQ5 295 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 MTCH1Q9NZJ7 389 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 FBLN5Q9UBX5 448 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ZNF257Q9Y2Q1 563 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 LOC102724200A0A096LPH7 203 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 A0A0J9YY10 115 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 A0A1B0GX78 115 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 SERINC4A6NH21 518 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 C9orf118A6NHY6 69 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 TNFRSF10CO14798 259 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 TAX1BP3O14907 124 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 FOXH1O75593 365 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 SERPINE2P07093 398 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 AMY2BP19961 511 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 KIR2DL2P43627 348 aaPredicted RBP3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms