RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 FCGR3AP08637 254 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 OR4A8P0C604 315 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 PPP3CBP16298 524 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 EGR1P18146 543 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 NAT1P18440 290 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 AMY2BP19961 511 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 ANXA7P20073 488 aaKnown RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 FAUP35544 74 aaKnown RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 PMELP40967 661 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 RPS23P62266 143 aaKnown RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 TFF3Q07654 80 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 SCGB2B2Q4G0G5 96 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 NHLRC3Q5JS37 347 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 NCMAPQ5T1S8 102 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 C1QTNF12Q5T7M4 302 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 IDO2Q6ZQW0 420 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 HOGA1Q86XE5 327 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 ZCCHC24Q8N2G6 241 aaKnown RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 POC1AQ8NBT0 407 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 OR13C8Q8NGS7 320 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 OR4K15Q8NH41 348 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 MRGPRFQ96AM1 343 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 OR2V2Q96R30 315 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 CMSS1Q9BQ75 279 aaKnown RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 GINS4Q9BRT9 223 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 TLNRD1Q9H1K6 362 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 KCNJ16Q9NPI9 418 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 C1orf123Q9NWV4 160 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 ING3Q9NXR8 418 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 TREM2Q9NZC2 230 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 POLDIP2Q9Y2S7 368 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 CFAP46Q8IYW2 2715 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 ANKHD1Q8IWZ3 2542 aaKnown RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 TRAV24A0A0B4J272 114 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 A0A1B0GUH1 482 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 OR2AT4A6NND4 320 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 SIRPB1O00241 398 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 HPXP02790 462 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 RLN1P04808 185 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 VSIG10L2P0DP72 767 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 ZNF44P15621 663 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 ZNF81P51508 661 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 CBX3Q13185 183 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 C4orf17Q53FE4 359 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 LCE3BQ5TA77 95 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 Q6P435 159 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 C17orf107Q6ZR85 190 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 MOGAT3Q86VF5 341 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 TGIF2LYQ8IUE0 185 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 BOLLQ8N9W6 283 aaKnown RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 SUMF2Q8NBJ7 301 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 GALNT11Q8NCW6 608 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 OR5T2Q8NGG2 359 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 NEK7Q8TDX7 302 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 CHAC2Q8WUX2 184 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 LRRC29Q8WV35 223 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 ITLN1Q8WWA0 313 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 GIMAP1Q8WWP7 306 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 HPS1Q92902 700 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 MEGF10Q96KG7 1140 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 SEC22CQ9BRL7 303 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 CHST6Q9GZX3 395 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 ESRP2Q9H6T0 727 aaKnown RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 FN3KRPQ9HA64 309 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 RCC2Q9P258 522 aaKnown RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 COPZ2Q9P299 210 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 OR14J1Q9UGF5 321 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 ZNF107Q9UII5 783 aaPredicted RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 EPG5Q9HCE0 2579 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 ABCA4P78363 2273 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 HCFC1P51610 2035 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 TRAV39A0A0B4J263 110 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A10PA6NDY2 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A18PA6NE21 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A16PA6NEW6 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 TUBAL3A6NHL2 446 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A20PA6NIJ5 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A8PA6NJQ4 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A7PA6NKC0 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A22PA8MWA6 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A12PA8MX19 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A5PA8MXJ8 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A23PA8MXZ1 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 DEGS1O15121 323 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 NOS1APO75052 506 aaPredicted RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 CA11O75493 328 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 PTBP3O95758 552 aaKnown RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 OR2H2O95918 312 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 DHFRP00374 187 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 HNRNPCP07910 306 aaKnown RBP eCLIP3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A15PP0C7V4 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A13PP0C7W8 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A14PP0C7W9 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM90A24PP0C7X0 464 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 CD200P41217 278 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 CBX5P45973 191 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 SELENOVP59797 346 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 BTG1P62324 171 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 CCL8P80075 99 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms