RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 HELTA6NFD8 242 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 GNG7O60262 68 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 AREGP15514 252 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 REG1BP48304 166 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 MMP15P51511 669 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 DYNLT3P51808 116 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 UBE2L3P68036 154 aaKnown RBP11.19□□□□□ -0.62
SDC3-201ENST00000336798 FAHD1Q6P587 224 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 SSMEM1Q8WWF3 244 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 GSX1Q9H4S2 264 aaPredicted RBP11.19□□□□□ -0.62
SDC3-201ENST00000336798 SLC7A10Q9NS82 523 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 DNAJB12Q9NXW2 375 aaKnown RBP11.19□□□□□ -0.62
SDC3-201ENST00000336798 VSIG4Q9Y279 399 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 PRRC2BQ5JSZ5 2229 aaKnown RBP11.19□□□□□ -0.62
SDC3-201ENST00000336798 IGKV3D-15A0A087WSY6 115 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 SPAARA0A1B0GVQ0 90 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 MBTPS2O43462 519 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 IGKV3-15P01624 115 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 SPCS3P61009 180 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 HLXQ14774 488 aaPredicted RBP11.18□□□□□ -0.62
SDC3-201ENST00000336798 PRICKLE4Q2TBC4 344 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 MUC15Q8N387 334 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 ASCL3Q9NQ33 180 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 THYN1Q9P016 225 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 IGHV3OR16-12A0A075B7B8 117 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 GEMIN2O14893 280 aaKnown RBP11.18□□□□□ -0.62
SDC3-201ENST00000336798 KLK8O60259 260 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 IGLV3-25P01717 112 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 TMEM241Q24JQ0 296 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 NHLRC1Q6VVB1 395 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 ZNF841Q6ZN19 808 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 PDPNQ86YL7 162 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 MRPL37Q9BZE1 423 aaKnown RBP11.18□□□□□ -0.62
SDC3-201ENST00000336798 TBX19O60806 448 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 CT62P0C5K7 136 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 PNLIPP16233 465 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 SCGB1D4Q6XE38 83 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 OR10A7Q8NGE5 316 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 SMIM4Q8WVI0 70 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 RND1Q92730 232 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 M0R2Z0 102 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 LANCL1O43813 399 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 CDKN2AP42771 156 aaKnown RBP11.18□□□□□ -0.62
SDC3-201ENST00000336798 GLDNQ6ZMI3 551 aaPredicted RBP11.18□□□□□ -0.62
SDC3-201ENST00000336798 IGHV1OR15-9A0A0B4J2B8 117 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 TRBV5-4A0A0C4DH59 114 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 SIAH2O43255 324 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 CCL4P13236 92 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 ACP1P24666 158 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 KCNJ3P48549 501 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 HOXA4Q00056 320 aaPredicted RBP11.18□□□□□ -0.62
SDC3-201ENST00000336798 OR10AC1Q8NH08 325 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 C19orf43Q9BQ61 176 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 FKBP11Q9NYL4 201 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 SIGLEC7Q9Y286 467 aa11.18□□□□□ -0.62
SDC3-201ENST00000336798 MRPS11P82912 194 aaKnown RBP11.17□□□□□ -0.62
SDC3-201ENST00000336798 PLAURQ03405 335 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 FAM24BQ8N5W8 94 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 ABHD3Q8WU67 409 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 SAP30LQ9HAJ7 183 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 RNASE1P07998 156 aaKnown RBP11.17□□□□□ -0.62
SDC3-201ENST00000336798 UQCC3Q6UW78 93 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 OR5A2Q8NGI9 324 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 NEIL1Q96FI4 390 aaPredicted RBP11.17□□□□□ -0.62
SDC3-201ENST00000336798 DPH3Q96FX2 82 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 MS4A10Q96PG2 267 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 BET1LQ9NYM9 111 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 C21orf58P58505 322 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 ST3GAL2Q16842 350 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 HIKESHIQ53FT3 197 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 LHX8Q68G74 356 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 CBLN3Q6UW01 205 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 MUC20Q8N307 709 aaPredicted RBP11.17□□□□□ -0.62
SDC3-201ENST00000336798 LINC01555Q8NAE3 123 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 SIRT5Q9NXA8 310 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 TINAGQ9UJW2 476 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 WSB1Q9Y6I7 421 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 KDM3BQ7LBC6 1761 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 C9orf170A2RU37 121 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 SFT2D2O95562 160 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 POLR2GP62487 172 aaKnown RBP eCLIP11.17□□□□□ -0.62
SDC3-201ENST00000336798 TBC1D26Q86UD7 250 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 LHX9Q9NQ69 397 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 OR2T8A6NH00 312 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 PLPP3O14495 311 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 WNT5AP41221 380 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 R3HDM4Q96D70 268 aa11.17□□□□□ -0.62
SDC3-201ENST00000336798 SHROOM3Q8TF72 1996 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 CDIPTO14735 213 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 TMEM174Q8WUU8 243 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 MOGAT1Q96PD6 335 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 CACFD1Q9UGQ2 172 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 TRAV38-1A0A0B4J264 116 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 ADAM11O75078 769 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 KIR2DS2P43631 304 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 B2MP61769 119 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 CBLN2Q8IUK8 224 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 OR4P4Q8NGL7 312 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 PIK3IP1Q96FE7 263 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 GPR27Q9NS67 375 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms