RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CHCHD3Q9NX63 227 aaKnown RBP13□□□□□ -0.33
CLN3-201ENST00000333496 ANK2Q01484 3957 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 SULT1B1O43704 296 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 ANGPTL7O43827 346 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 ZNF737O75373 536 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 TK1P04183 234 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 CALCBP10092 127 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 CAPZA1P52907 286 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 BPIFB3P59826 476 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 PRB3Q04118 309 aaPredicted RBP12.99□□□□□ -0.33
CLN3-201ENST00000333496 DEFB112Q30KQ8 113 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 PDZD9Q8IXQ8 264 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 NANOGP1Q8N7R0 232 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 ZFP41Q8N8Y5 198 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 OR51A2Q8NGJ7 313 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 OR5D18Q8NGL1 313 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 OR6Q1Q8NGQ2 317 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 OR13C5Q8NGS8 318 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 GPR148Q8TDV2 347 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 EMG1Q92979 244 aaKnown RBP12.99□□□□□ -0.33
CLN3-201ENST00000333496 PGLYRP3Q96LB9 341 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 DUX5Q96PT3 197 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 LSM2Q9Y333 95 aaKnown RBP12.99□□□□□ -0.33
CLN3-201ENST00000333496 A3GALT2U3KPV4 340 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 TRBV23-1A0A0A0MS06 115 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 IGHV1-69DA0A0B4J2H0 117 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 TRIM77I1YAP6 450 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 K7N7A8 449 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 MYL12BO14950 172 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 IGHV1-69P01742 117 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 ZP1P60852 638 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 VBP1P61758 197 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 UBA52P62987 128 aaKnown RBP12.99□□□□□ -0.33
CLN3-201ENST00000333496 MED22Q15528 200 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 KISS1Q15726 138 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 METAP1DQ6UB28 335 aaPredicted RBP12.99□□□□□ -0.33
CLN3-201ENST00000333496 Q8IYB0 196 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 FAM216AQ8WUB2 273 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 GHSRQ92847 366 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 TNFRSF14Q92956 283 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 OR5M11Q96RB7 305 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 PRDM13Q9H4Q3 707 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 ZNF281Q9Y2X9 895 aa12.99□□□□□ -0.33
CLN3-201ENST00000333496 KIAA2026Q5HYC2 2103 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 A0A1W2PQ09 198 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 DNAJC9-AS1A6NH13 148 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 RNASEK-C17orf49H0YIS7 233 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 CHRM2P08172 466 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 HCKP08631 526 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 DUSP1P28562 367 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 RPS11P62280 158 aaKnown RBP eCLIP12.98□□□□□ -0.33
CLN3-201ENST00000333496 ZNF146Q15072 292 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 SPHARQ15513 63 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 RBMS3Q6XE24 437 aaKnown RBP12.98□□□□□ -0.33
CLN3-201ENST00000333496 C1orf122Q6ZSJ8 110 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 FAM185AQ8N0U4 392 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 FAM58AQ8N1B3 248 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 PIP4P2Q8N4L2 257 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 OR4M1Q8NGD0 313 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 TMEM106AQ96A25 262 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 ORAI1Q96D31 301 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 SLIRPQ9GZT3 109 aaKnown RBP12.98□□□□□ -0.33
CLN3-201ENST00000333496 FAM234AQ9H0X4 552 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 SEBOXQ9HB31 216 aaPredicted RBP12.98□□□□□ -0.33
CLN3-201ENST00000333496 TAS2R4Q9NYW5 299 aa12.98□□□□□ -0.33
CLN3-201ENST00000333496 TRBV5-5A0A0J9YX44 114 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 TMEM82A0PJX8 343 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 M0R1W7 72 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 AIREO43918 545 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 KDM4BO94953 1096 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 HAND1O96004 215 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 CYB5AP00167 134 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 PRKACAP17612 351 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 PRTN3P24158 256 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 NCS1P62166 190 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 RPL31P62899 125 aaKnown RBP12.97□□□□□ -0.33
CLN3-201ENST00000333496 BAMBIQ13145 260 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 KLRD1Q13241 179 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 TRIM16LQ309B1 348 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 TMEM200BQ69YZ2 307 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 C17orf107Q6ZR85 190 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 CMTM4Q8IZR5 234 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 MFSD4AQ8N468 514 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 C11orf42Q8N5U0 333 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 ASCC1Q8N9N2 400 aaKnown RBP12.97□□□□□ -0.33
CLN3-201ENST00000333496 MGLLQ99685 303 aa12.97□□□□□ -0.33
CLN3-201ENST00000333496 UNKLQ9H9P5 680 aaKnown RBP12.97□□□□□ -0.33
CLN3-201ENST00000333496 CCDC59Q9P031 241 aaKnown RBP12.97□□□□□ -0.33
CLN3-201ENST00000333496 STAB1Q9NY15 2570 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 PNMA8CA0A1B0GUJ8 204 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 FUOMA2VDF0 154 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 PSPNO60542 156 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 CD2P06729 351 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 HSMCR30P0CW71 290 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 RAB3AP20336 220 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 CD40LGP29965 261 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 BCAP31P51572 246 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 WNT4P56705 351 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 LSM3P62310 102 aaKnown RBP12.96□□□□□ -0.33
CLN3-201ENST00000333496 ZNF273Q14593 569 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms