RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 HMSDA8MTL9 139 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 CCR5P51681 352 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 ST6GAL2Q96JF0 529 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 OR2A5Q96R48 311 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 OR4C12Q96R67 309 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 TMEM140Q9NV12 185 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 IGHA1P01876 353 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 PLP1P60201 277 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 TUSC5Q8IXB3 177 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 SH2D2AQ9NP31 389 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 GEMIN2O14893 280 aaKnown RBP8.8□□□□□ -1
COL6A3-201ENST00000295550 ALOX12BO75342 701 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 APCSP02743 223 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 PXNP49023 591 aaPredicted RBP8.8□□□□□ -1
COL6A3-201ENST00000295550 LIMK1P53667 647 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 TMEM30CPA0ZSE6 113 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 OR5B21A6NL26 309 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 INHBBP09529 407 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 C1QTNF6Q9BXI9 259 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 DNAJB12Q9NXW2 375 aaKnown RBP8.8□□□□□ -1
COL6A3-201ENST00000295550 TRAT1Q6PIZ9 186 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 FOXJ3Q9UPW0 622 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 B4DEV8 164 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 ARG1P05089 322 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 ZBTB25P24278 435 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 SLC6A1P30531 599 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 CD81P60033 236 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 HLA-DRB5Q30154 266 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 C6orf201Q7Z4U5 140 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 DOK5Q9P104 306 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 ONECUT1Q9UBC0 465 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 CD27P26842 260 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 HLA-DRB3P79483 266 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 DLK1P80370 383 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 SP6Q3SY56 376 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 MRGPREQ86SM8 312 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 ADPRHL1Q8NDY3 354 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 OR1B1Q8NGR6 318 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 ADAT3Q96EY9 351 aaPredicted RBP8.79□□□□□ -1
COL6A3-201ENST00000295550 RBM14Q96PK6 669 aaKnown RBP8.79□□□□□ -1
COL6A3-201ENST00000295550 CLEC5AQ9NY25 188 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 CACNG5Q9UF02 275 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 TCRBV16S1A1N1A0A5B0 115 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 FAM53BQ14153 422 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 BVESQ8NE79 360 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 COX14Q96I36 57 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 MRPS2Q9Y399 296 aaKnown RBP8.79□□□□□ -1
COL6A3-201ENST00000295550 SLC22A20A6NK97 555 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 MS4A18H0YCH9 400 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 INSM1Q01101 510 aaPredicted RBP8.79□□□□□ -1
COL6A3-201ENST00000295550 MS4A18Q3C1V0 323 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 PDPNQ86YL7 162 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 MORN4Q8NDC4 146 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 RAB24Q969Q5 203 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 FBXL17Q9UF56 701 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 SPG11Q96JI7 2443 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 ISLRO14498 428 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 ATF1P18846 271 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 OR10J1P30954 320 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 SEZ6L2Q6UXD5 910 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 WDR31Q8NA23 367 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 VN1R17PQ8TDU5 208 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 VN1R1Q9GZP7 353 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 GSTZ1O43708 216 aaPredicted RBP8.79□□□□□ -1
COL6A3-201ENST00000295550 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.79□□□□□ -1
COL6A3-201ENST00000295550 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.79□□□□□ -1
COL6A3-201ENST00000295550 NPTNQ9Y639 398 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 CISD3P0C7P0 127 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 ZNF141Q15928 474 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 NHLRC1Q6VVB1 395 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 UBALD1Q8TB05 177 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 MCHR2Q969V1 340 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 OXGR1Q96P68 337 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 ANGPTL4Q9BY76 406 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 A0A087WUJ7 227 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 C9orf170A2RU37 121 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 CORTO00230 105 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 TCL1AP56279 114 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 DTD1Q8TEA8 209 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 TMPRSS13Q9BYE2 586 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 NAA60Q9H7X0 242 aa8.79□□□□□ -1
COL6A3-201ENST00000295550 FUT6P51993 359 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 TP53I13Q8NBR0 393 aaPredicted RBP8.78□□□□□ -1
COL6A3-201ENST00000295550 OR4A4PQ8NGN8 299 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 FUT9Q9Y231 359 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 LINC01555Q8NAE3 123 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 ARHGAP5-AS1Q96IT6 56 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 TMEM238LA0A1B0GVL6 79 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 A6NJY4 79 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 METAP1P53582 386 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 SPINK9Q5DT21 86 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 IGSF23A1L1A6 192 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 KLF7O75840 302 aaPredicted RBP8.78□□□□□ -1
COL6A3-201ENST00000295550 YRDCQ86U90 279 aaKnown RBP8.78□□□□□ -1
COL6A3-201ENST00000295550 TBC1D26Q86UD7 250 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 ATP23Q9Y6H3 246 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 HTRA3P83110 453 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 SPATA46Q5T0L3 261 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 KIRREL2Q6UWL6 708 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 VASH2Q86V25 355 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms