RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SERINC1Q9NRX5 453 aa12.52□□□□□ -0.41
SDC1-201ENST00000254351 A0A1W2PQF6 199 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 OR2J2O76002 312 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 DDAH2O95865 285 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 CTSDP07339 412 aaPredicted RBP12.51□□□□□ -0.41
SDC1-201ENST00000254351 KIR2DL1P43626 348 aaPredicted RBP12.51□□□□□ -0.41
SDC1-201ENST00000254351 ADIRFQ15847 76 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 GPBAR1Q8TDU6 330 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 RBM14Q96PK6 669 aaKnown RBP12.51□□□□□ -0.41
SDC1-201ENST00000254351 CCNL2Q96S94 520 aaPredicted RBP12.51□□□□□ -0.41
SDC1-201ENST00000254351 DDA1Q9BW61 102 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 CALHM2Q9HA72 323 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 ZNF160Q9HCG1 818 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 GLRX2Q9NS18 164 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 PCDH15Q96QU1 1955 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 FRG2CA6NGY1 282 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 ZNF814B7Z6K7 855 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 ALG1L2C9J202 215 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 C9J4A7 227 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 AKT2P31751 481 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 RTP5Q14D33 572 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 FBXL14Q8N1E6 418 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 LAMP3Q9UQV4 416 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 A8MWP6 167 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 AMBPP02760 352 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 CLN3Q13286 438 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 BOD1Q96IK1 185 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 RSG1Q9BU20 258 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 AURKAIP1Q9NWT8 199 aaPredicted RBP12.51□□□□□ -0.41
SDC1-201ENST00000254351 COPS7AQ9UBW8 275 aa12.51□□□□□ -0.41
SDC1-201ENST00000254351 UBE2J1Q9Y385 318 aaPredicted RBP12.51□□□□□ -0.41
SDC1-201ENST00000254351 TNRC18O15417 2968 aaPredicted RBP12.5□□□□□ -0.41
SDC1-201ENST00000254351 XKRY2A2RUG3 117 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 MYF5P13349 255 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 BMP5P22003 454 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 NKX2-1P43699 371 aaPredicted RBP12.5□□□□□ -0.41
SDC1-201ENST00000254351 COL10A1Q03692 680 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 MRPL41Q8IXM3 137 aaKnown RBP12.5□□□□□ -0.41
SDC1-201ENST00000254351 LFNGQ8NES3 379 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 LYZL4Q96KX0 146 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 VSIRQ9H7M9 311 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 CHD3Q12873 2000 aaKnown RBP12.5□□□□□ -0.41
SDC1-201ENST00000254351 IGHV3-15A0A0B4J1V0 119 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 A0A1B0GUS0 222 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 GUSBP08236 651 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 BTF3P20290 206 aaKnown RBP12.5□□□□□ -0.41
SDC1-201ENST00000254351 IDH3GP51553 393 aaPredicted RBP12.5□□□□□ -0.41
SDC1-201ENST00000254351 UCP2P55851 309 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 IGLV3-21P80748 117 aaPredicted RBP12.5□□□□□ -0.41
SDC1-201ENST00000254351 TMEM267Q0VDI3 215 aaPredicted RBP12.5□□□□□ -0.41
SDC1-201ENST00000254351 MYBPHQ13203 477 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 ZNF66Q6ZN08 573 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 OR4X1Q8NH49 305 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 MRGPRX1Q96LB2 322 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 ARV1Q9H2C2 271 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 ZNF576Q9H609 170 aa12.5□□□□□ -0.41
SDC1-201ENST00000254351 BRWD1Q9NSI6 2320 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 ADAM20O43506 726 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 GALR2O43603 387 aaPredicted RBP12.49□□□□□ -0.41
SDC1-201ENST00000254351 SCGB1D1O95968 90 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 RPL29P47914 159 aaKnown RBP12.49□□□□□ -0.41
SDC1-201ENST00000254351 HYAL1Q12794 435 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 PMS2P11Q13670 270 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 DEGS2Q6QHC5 323 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 LIAT1Q6ZQX7 453 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 UEVLDQ8IX04 471 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 MRPL37Q9BZE1 423 aaKnown RBP12.49□□□□□ -0.41
SDC1-201ENST00000254351 SIRT7Q9NRC8 400 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 PRRC2CQ9Y520 2896 aaKnown RBP12.49□□□□□ -0.41
SDC1-201ENST00000254351 A0A1W2PPQ1 181 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 CEBPZOSA8MTT3 80 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 PROB1E7EW31 1015 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 ZNF43P17038 809 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 GNRHRP30968 328 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 RPS18P62269 152 aaKnown RBP12.49□□□□□ -0.41
SDC1-201ENST00000254351 SMAD4Q13485 552 aaKnown RBP12.49□□□□□ -0.41
SDC1-201ENST00000254351 TESK1Q15569 626 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 RHBDD1Q8TEB9 315 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 TMEM68Q96MH6 324 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 KLRF1Q9NZS2 232 aa12.49□□□□□ -0.41
SDC1-201ENST00000254351 C3orf80F5H4A9 247 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 BCAT2O15382 392 aaPredicted RBP12.48□□□□□ -0.41
SDC1-201ENST00000254351 FGF7P21781 194 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 ELLP55199 621 aaPredicted RBP12.48□□□□□ -0.41
SDC1-201ENST00000254351 DOCK11Q5JSL3 2073 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 ZNF695Q8IW36 515 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 TMEM252Q8N6L7 170 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 RLN3Q8WXF3 142 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 RPUSD4Q96CM3 377 aaKnown RBP12.48□□□□□ -0.41
SDC1-201ENST00000254351 SERPINE3A8MV23 424 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 TMEM50AO95807 157 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 TNFRSF9Q07011 255 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 FAM69BQ5VUD6 431 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 NCR3LG1Q68D85 454 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 M1APQ8TC57 530 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 HIST1H2AAQ96QV6 131 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 NEU1Q99519 415 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 ELOVL1Q9BW60 279 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 NECAP2Q9NVZ3 263 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 RALGAPA1Q6GYQ0 2036 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms