RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 TREM2Q9NZC2 230 aa11.23□□□□□ -0.61
SLIRP-201ENST00000238688 MGAT4AQ9UM21 535 aa11.23□□□□□ -0.61
SLIRP-201ENST00000238688 KCNK7Q9Y2U2 307 aa11.23□□□□□ -0.61
SLIRP-201ENST00000238688 IGLV3-9A0A075B6K5 115 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 IGKV1-12A0A0C4DH73 117 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 A0A1W2PR80 420 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 ANGPTL7O43827 346 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 TIMM8AO60220 97 aaPredicted RBP11.22□□□□□ -0.61
SLIRP-201ENST00000238688 SNAPC5O75971 98 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 IGKV1D-12P01611 117 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 FCER2P06734 321 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 CA6P23280 308 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 CFHR2P36980 270 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 MDH2P40926 338 aaKnown RBP11.22□□□□□ -0.61
SLIRP-201ENST00000238688 RRAS2P62070 204 aaPredicted RBP11.22□□□□□ -0.61
SLIRP-201ENST00000238688 GUCA2AQ02747 115 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 RBM39Q14498 530 aaKnown RBP11.22□□□□□ -0.61
SLIRP-201ENST00000238688 TSC22D1Q15714 1073 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 SHEQ5VZ18 495 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 VPS13CQ709C8 3753 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 RNF144BQ7Z419 303 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 FAM90A1Q86YD7 464 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 HPS1Q92902 700 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 DIRC2Q96SL1 478 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 GHITMQ9H3K2 345 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 ZNF442Q9H7R0 627 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 C12orf4Q9NQ89 552 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 ING3Q9NXR8 418 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 MYEF2Q9P2K5 600 aaKnown RBP11.22□□□□□ -0.61
SLIRP-201ENST00000238688 GLS2Q9UI32 602 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 ALG5Q9Y673 324 aa11.22□□□□□ -0.61
SLIRP-201ENST00000238688 FLNAP21333 2647 aaKnown RBP11.22□□□□□ -0.61
SLIRP-201ENST00000238688 DSCAMO60469 2012 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 RAI1Q7Z5J4 1906 aaPredicted RBP11.21□□□□□ -0.61
SLIRP-201ENST00000238688 TRBV6-6A0A0A6YYG2 114 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 A0A0B4J293 547 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 A0A1W2PP11 408 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 TUBAL3A6NHL2 446 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 M0R1B8 84 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 SSX5O60225 188 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 CCNKO75909 580 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 DIRAS3O95661 229 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 AMY2AP04746 511 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 SFTPBP07988 381 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 PTHLHP12272 177 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 GABRR1P24046 479 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 CD40P25942 277 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 CD200P41217 278 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 CCR6P51684 374 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 KLF3P57682 345 aaPredicted RBP11.21□□□□□ -0.61
SLIRP-201ENST00000238688 TAS2R31P59538 309 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 HAGHLQ6PII5 290 aaPredicted RBP11.21□□□□□ -0.61
SLIRP-201ENST00000238688 TCTE3Q8IZS6 198 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 FAM58AQ8N1B3 248 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 BPIFB2Q8N4F0 458 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 BHLHE23Q8NDY6 225 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 BEST4Q8NFU0 473 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 OR10AD1Q8NGE0 317 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 OR51S1Q8NGJ8 323 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 OR5H2Q8NGV7 314 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 OR10K1Q8NGX5 313 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 OR10Z1Q8NGY1 313 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 OR6F1Q8NGZ6 308 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 OR4K15Q8NH41 348 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 NUDCD2Q8WVJ2 157 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 NINJ1Q92982 152 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 FBXW5Q969U6 566 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 ERGIC1Q969X5 290 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 FOXC2Q99958 501 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 GINS4Q9BRT9 223 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 PLEKHF2Q9H8W4 249 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 RASL12Q9NYN1 266 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 ZNF221Q9UK13 617 aa11.21□□□□□ -0.61
SLIRP-201ENST00000238688 PLCE1Q9P212 2302 aa11.21□□□□□ -0.62
SLIRP-201ENST00000238688 PLSCR5A0PG75 271 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 UBE2QL1A1L167 161 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 CREBL2O60519 120 aaPredicted RBP11.2□□□□□ -0.62
SLIRP-201ENST00000238688 PGA5P0DJD9 388 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 AMY2BP19961 511 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 CALCRP30988 508 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 CCKARP32238 428 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 OR3A3P47888 321 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 KCNJ3P48549 501 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 ZNF83P51522 516 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 ERVK11-1P61568 191 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 ZNF146Q15072 292 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 TAF9Q16594 264 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 SPATA46Q5T0L3 261 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 SFRP4Q6FHJ7 346 aaPredicted RBP11.2□□□□□ -0.62
SLIRP-201ENST00000238688 SIGIRRQ6IA17 410 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 GLDNQ6ZMI3 551 aaPredicted RBP11.2□□□□□ -0.62
SLIRP-201ENST00000238688 IDO2Q6ZQW0 420 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 MOB1BQ7L9L4 216 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 OR5AP2Q8NGF4 316 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 CMSS1Q9BQ75 279 aaKnown RBP11.2□□□□□ -0.62
SLIRP-201ENST00000238688 NRIP2Q9BQI9 281 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 TMUB1Q9BVT8 246 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 MED28Q9H204 178 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 OR51J1Q9H342 316 aa11.2□□□□□ -0.62
SLIRP-201ENST00000238688 ZMAT3Q9HA38 289 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms