RNA–Protein interactions for RNA: ENST00000238146.8

DDX55-201, Transcript of DEAD-box helicase 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX55, Length 2,654 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-201ENST00000238146 HIST1H2BJP06899 126 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 CD63P08962 238 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 AADACP22760 399 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 HIST1H2BOP23527 126 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 HIST1H2BBP33778 126 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 HIST1H2BDP58876 126 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 HIST1H2BCP62807 126 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 H3F3AP84243 136 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 SHHQ15465 462 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 HIST2H2BEQ16778 126 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.44□□□□□ -0.26
DDX55-201ENST00000238146 ZNF429Q86V71 674 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 CCDC71LQ8N9Z2 235 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 HIST1H2BHQ93079 126 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 HIST1H2BNQ99877 126 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 HIST1H2BMQ99879 126 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 ZNF286AQ9HBT8 521 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 BRWD1Q9NSI6 2320 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 IGKV1-12A0A0C4DH73 117 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 DHHO43323 396 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 CDS2O95674 445 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 IGKV1D-12P01611 117 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 NKX2-1P43699 371 aaPredicted RBP13.44□□□□□ -0.26
DDX55-201ENST00000238146 ICAM4Q14773 271 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 ASCL4Q6XD76 172 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 CYB561D1Q8N8Q1 229 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 NAXEQ8NCW5 288 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 SPTSSAQ969W0 71 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 INTS12Q96CB8 462 aaKnown RBP13.44□□□□□ -0.26
DDX55-201ENST00000238146 OPA3Q9H6K4 179 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 HS3ST3B1Q9Y662 390 aa13.44□□□□□ -0.26
DDX55-201ENST00000238146 TGIF2-C20orf24A0A0A6YYL0 155 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 IGHV3-15A0A0B4J1V0 119 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 C3orf85A0A1B0GTC6 90 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 PROB1E7EW31 1015 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 NKAIN1Q4KMZ8 207 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 TMEM252Q8N6L7 170 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 BCO1Q9HAY6 547 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 TRDCB7Z8K6 153 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 MPPED1O15442 326 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 ZFAND5O76080 213 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 SCAF4O95104 1147 aaKnown RBP13.43□□□□□ -0.26
DDX55-201ENST00000238146 KLK3P07288 261 aaPredicted RBP13.43□□□□□ -0.26
DDX55-201ENST00000238146 RBP2P50120 134 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 HERV-K104P61576 105 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 PDCD1Q15116 288 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 FADS6Q8N9I5 356 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 OR10D4PQ8NGN7 298 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 ZNF837Q96EG3 531 aaPredicted RBP13.43□□□□□ -0.26
DDX55-201ENST00000238146 PLEKHF2Q9H8W4 249 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 GLRX2Q9NS18 164 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 TCFL5Q9UL49 500 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 MTCH2Q9Y6C9 303 aa13.43□□□□□ -0.26
DDX55-201ENST00000238146 PIAS2O75928 621 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 TIAF1O95411 115 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 LY86O95711 162 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 DEFA6Q01524 100 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 PRAMEF20Q5VT98 475 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 ODF3L1Q8IXM7 274 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 TMEM123Q8N131 208 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 TSTD1Q8NFU3 115 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 OR5C1Q8NGR4 320 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 TVP23CQ96ET8 276 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 BORCS8Q96FH0 119 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 TMEM222Q9H0R3 208 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 MAGT1Q9H0U3 335 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 PRDM13Q9H4Q3 707 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 LYRM2Q9NU23 88 aaPredicted RBP13.42□□□□□ -0.26
DDX55-201ENST00000238146 SLC7A11Q9UPY5 501 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 WSB1Q9Y6I7 421 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 SEC14L6B5MCN3 397 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 ATXN7O15265 892 aaPredicted RBP13.42□□□□□ -0.26
DDX55-201ENST00000238146 HSPA12AO43301 675 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 SSSCA1O60232 199 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 PPYP01298 95 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 HSPB1P04792 205 aaKnown RBP13.42□□□□□ -0.26
DDX55-201ENST00000238146 EN2P19622 333 aaPredicted RBP13.42□□□□□ -0.26
DDX55-201ENST00000238146 CNN3Q15417 329 aaKnown RBP13.42□□□□□ -0.26
DDX55-201ENST00000238146 CXorf66Q5JRM2 361 aaPredicted RBP13.42□□□□□ -0.26
DDX55-201ENST00000238146 ZNF506Q5JVG8 444 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 GFI1BQ5VTD9 330 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 KMT5CQ86Y97 462 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 OSR2Q8N2R0 312 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 ST3GAL6Q9Y274 331 aa13.42□□□□□ -0.26
DDX55-201ENST00000238146 CXorf65A6NEN9 183 aa13.41□□□□□ -0.26
DDX55-201ENST00000238146 CCDC85CA6NKD9 419 aa13.41□□□□□ -0.26
DDX55-201ENST00000238146 EPHA1P21709 976 aa13.41□□□□□ -0.26
DDX55-201ENST00000238146 CRYGSP22914 178 aa13.41□□□□□ -0.26
DDX55-201ENST00000238146 RGS19P49795 217 aa13.41□□□□□ -0.26
DDX55-201ENST00000238146 NXPH1P58417 271 aa13.41□□□□□ -0.26
DDX55-201ENST00000238146 SYT13Q7L8C5 426 aa13.41□□□□□ -0.26
DDX55-201ENST00000238146 ZNF784Q8NCA9 323 aaPredicted RBP13.41□□□□□ -0.26
DDX55-201ENST00000238146 SPACA9Q96E40 222 aaPredicted RBP13.41□□□□□ -0.26
DDX55-201ENST00000238146 UCN2Q96RP3 112 aa13.41□□□□□ -0.26
DDX55-201ENST00000238146 RASL10BQ96S79 203 aa13.41□□□□□ -0.26
DDX55-201ENST00000238146 NIPSNAP3BQ9BS92 247 aa13.41□□□□□ -0.26
DDX55-201ENST00000238146 SIRT7Q9NRC8 400 aa13.41□□□□□ -0.26
DDX55-201ENST00000238146 SDK1Q7Z5N4 2213 aa13.41□□□□□ -0.26
DDX55-201ENST00000238146 ASCC3Q8N3C0 2202 aaKnown RBP13.41□□□□□ -0.26
DDX55-201ENST00000238146 CABIN1Q9Y6J0 2220 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms