RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 PRDM14Q9GZV8 571 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 ATPIF1Q9UII2 106 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 STARD10Q9Y365 291 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 SDK2Q58EX2 2172 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 EDN3P14138 238 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 RFC3P40938 356 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 MALLQ13021 153 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 Q6ZPA2 131 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 COLCA1Q6ZS62 124 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 LYZL2Q7Z4W2 148 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 LINC00518Q8N0U6 118 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 LGI3Q8N145 548 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 GLYATL2Q8WU03 294 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 SYT3Q9BQG1 590 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 PLSCR2Q9NRY7 297 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 FAM212BQ9NTI7 297 aaPredicted RBP11.04□□□□□ -0.64
LINC00540-203ENST00000631321 ZNF175Q9Y473 711 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 WDR87Q6ZQQ6 2873 aa11.04□□□□□ -0.64
LINC00540-203ENST00000631321 C9JQL5 133 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 CER1O95813 267 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 SEC11BP0C7V7 166 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FUT3P21217 361 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 DUSP1P28562 367 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 P2RY1P47900 373 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 UCP2P55851 309 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 GFRA1P56159 465 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 IL13RA2Q14627 380 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 PLCXD3Q63HM9 321 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 Q6ZRG5 221 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 Q6ZS49 121 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 COMMD1Q8N668 190 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 CPNE4Q96A23 557 aaPredicted RBP11.03□□□□□ -0.64
LINC00540-203ENST00000631321 GINS3Q9BRX5 216 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 DEPPQ9NTK1 212 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A10PA6NDY2 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A18PA6NE21 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A16PA6NEW6 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A20PA6NIJ5 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A8PA6NJQ4 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A7PA6NKC0 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A22PA8MWA6 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A12PA8MX19 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A5PA8MXJ8 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A23PA8MXZ1 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 ZNF205O95201 554 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 SCGB1D2O95969 90 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A15PP0C7V4 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A13PP0C7W8 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A14PP0C7W9 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FAM90A24PP0C7X0 464 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 GLP1RP43220 463 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 FXYD4P59646 89 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 PHLDA2Q53GA4 152 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 WIPI1Q5MNZ9 446 aaPredicted RBP11.03□□□□□ -0.64
LINC00540-203ENST00000631321 ACER2Q5QJU3 275 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 BRICD5Q6PL45 260 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 BSCL2Q96G97 398 aaPredicted RBP11.03□□□□□ -0.64
LINC00540-203ENST00000631321 SMIM3Q9BZL3 60 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 WFDC1Q9HC57 220 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 MLXQ9UH92 298 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 TCFL5Q9UL49 500 aa11.03□□□□□ -0.64
LINC00540-203ENST00000631321 BORCS7-ASMTA0A0B4J1R7 106 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 FAM221AA4D161 298 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 PATE3B3GLJ2 98 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 FARS2O95363 451 aaKnown RBP11.02□□□□□ -0.65
LINC00540-203ENST00000631321 GLAP06280 429 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 OR8U9P0C7N5 309 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 DANCRP0C864 163 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 SRSF7Q16629 238 aaKnown RBP eCLIP11.02□□□□□ -0.65
LINC00540-203ENST00000631321 TSPO2Q5TGU0 170 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 CCDC71LQ8N9Z2 235 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 DMBX1Q8NFW5 382 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 OR8U1Q8NH10 309 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 PIGCQ92535 297 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 KIRREL1Q96J84 757 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 ZDHHC8Q9ULC8 765 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 TMED3Q9Y3Q3 217 aa11.02□□□□□ -0.65
LINC00540-203ENST00000631321 IGKV3D-15A0A087WSY6 115 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 ZNF587BE7ETH6 402 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 SPP1P10451 314 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 AADACP22760 399 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 LMO1P25800 156 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 PAX6P26367 422 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 OTX2P32243 289 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 CD80P33681 288 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 RPS18P62269 152 aaKnown RBP11.01□□□□□ -0.65
LINC00540-203ENST00000631321 FOXO1Q12778 655 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 FAM76BQ5HYJ3 339 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 OR5L1Q8NGL2 311 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 OR4D5Q8NGN0 318 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 PARPBPQ9NWS1 579 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 FBXO9Q9UK97 447 aaPredicted RBP11.01□□□□□ -0.65
LINC00540-203ENST00000631321 TRAPPC6AO75865 159 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 SERPINA7P05543 415 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 ID4P47928 161 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 HERV-K104P61576 105 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 HMGN3Q15651 99 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 SWI5Q1ZZU3 235 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 CALHM1Q8IU99 346 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 IQCF2Q8IXL9 164 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms