RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ZP1P60852 638 aa17.09■□□□□ 0.33
CLN3-240ENST00000631023 COL10A1Q03692 680 aa17.09■□□□□ 0.33
CLN3-240ENST00000631023 GPR157Q5UAW9 335 aa17.09■□□□□ 0.33
CLN3-240ENST00000631023 KIR3DL3Q8N743 410 aa17.09■□□□□ 0.33
CLN3-240ENST00000631023 ASCC1Q8N9N2 400 aaKnown RBP17.09■□□□□ 0.33
CLN3-240ENST00000631023 PXT1Q8NFP0 134 aa17.09■□□□□ 0.33
CLN3-240ENST00000631023 OR5D13Q8NGL4 314 aa17.09■□□□□ 0.33
CLN3-240ENST00000631023 TBC1D15Q8TC07 691 aa17.09■□□□□ 0.33
CLN3-240ENST00000631023 MS4A7Q9GZW8 240 aaPredicted RBP17.09■□□□□ 0.33
CLN3-240ENST00000631023 SIRPDQ9H106 197 aa17.09■□□□□ 0.33
CLN3-240ENST00000631023 TRAV40A0A0B4J280 105 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 IGKV1-12A0A0C4DH73 117 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 K7N7A8 449 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 HAND1O96004 215 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 IGKV1D-12P01611 117 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 TGFBR2P37173 567 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 BPIFB3P59826 476 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 DOC2BQ14184 412 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 ZNF146Q15072 292 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 PDCD1Q15116 288 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 DDI2Q5TDH0 399 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 CRIP3Q6Q6R5 217 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 DERL3Q96Q80 235 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 SUCNR1Q9BXA5 334 aa17.08■□□□□ 0.32
CLN3-240ENST00000631023 ELL3Q9HB65 397 aaPredicted RBP17.08■□□□□ 0.32
CLN3-240ENST00000631023 TRBV5-7A0A0A0MS05 114 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 A0A1W2PPK0 400 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 SH2D1BO14796 132 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 HSMCR30P0CW71 290 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 IGHV4-38-2P0DP08 117 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 MMP9P14780 707 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 IGFBP3P17936 291 aaPredicted RBP17.07■□□□□ 0.32
CLN3-240ENST00000631023 FSTP19883 344 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 ZNF93P35789 620 aaPredicted RBP17.07■□□□□ 0.32
CLN3-240ENST00000631023 RPL31P62899 125 aaKnown RBP17.07■□□□□ 0.32
CLN3-240ENST00000631023 BLMHQ13867 455 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 TNFAIP8L1Q8WVP5 186 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 UFD1Q92890 307 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 SNX22Q96L94 193 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 FAM192AQ9GZU8 254 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 ISYNA1Q9NPH2 558 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 FOXJ3Q9UPW0 622 aa17.07■□□□□ 0.32
CLN3-240ENST00000631023 A0A1W2PPH5 198 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 GABRPO00591 440 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 SFTPBP07988 381 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 PTGFRP43088 359 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 MTNR1BP49286 362 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 C1orf122Q6ZSJ8 110 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 USP43Q70EL4 1123 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 FAM185AQ8N0U4 392 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 PPP1R35Q8TAP8 253 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 C22orf15Q8WYQ4 148 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 ORAI1Q96D31 301 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 JMJD8Q96S16 334 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 TBX15Q96SF7 602 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 S100A13Q99584 98 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 SLC6A7Q99884 636 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 ZNF69Q9UC07 566 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 GSTK1Q9Y2Q3 226 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 COL6A5A8TX70 2615 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 IGHV3OR16-10A0A075B7F0 116 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 CALCBP10092 127 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 DUSP1P28562 367 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 SNU13P55769 128 aaKnown RBP17.06■□□□□ 0.32
CLN3-240ENST00000631023 GABARAPL2P60520 117 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 RSU1Q15404 277 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 ACSM3Q53FZ2 586 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 RBMS3Q6XE24 437 aaKnown RBP17.06■□□□□ 0.32
CLN3-240ENST00000631023 GDPD3Q7L5L3 318 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 OR8H2Q8N162 312 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 TMED9Q9BVK6 235 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 YTHDF1Q9BYJ9 559 aaKnown RBP17.06■□□□□ 0.32
CLN3-240ENST00000631023 EXOSC4Q9NPD3 245 aaKnown RBP17.06■□□□□ 0.32
CLN3-240ENST00000631023 IL36RNQ9UBH0 155 aa17.06■□□□□ 0.32
CLN3-240ENST00000631023 TRAV8-7A0A075B6U6 113 aa17.05■□□□□ 0.32
CLN3-240ENST00000631023 M0R1W7 72 aa17.05■□□□□ 0.32
CLN3-240ENST00000631023 MRPS14O60783 128 aaKnown RBP17.05■□□□□ 0.32
CLN3-240ENST00000631023 ZNF737O75373 536 aa17.05■□□□□ 0.32
CLN3-240ENST00000631023 GABRR1P24046 479 aa17.05■□□□□ 0.32
CLN3-240ENST00000631023 MLLT11Q13015 90 aaPredicted RBP17.05■□□□□ 0.32
CLN3-240ENST00000631023 TPBGQ13641 420 aa17.05■□□□□ 0.32
CLN3-240ENST00000631023 LIPKQ5VXJ0 399 aa17.05■□□□□ 0.32
CLN3-240ENST00000631023 ELP2Q6IA86 826 aa17.05■□□□□ 0.32
CLN3-240ENST00000631023 VMO1Q7Z5L0 202 aa17.05■□□□□ 0.32
CLN3-240ENST00000631023 TMEM158Q8WZ71 300 aa17.05■□□□□ 0.32
CLN3-240ENST00000631023 NOX4Q9NPH5 578 aa17.05■□□□□ 0.32
CLN3-240ENST00000631023 MAP2K4P45985 399 aa17.04■□□□□ 0.32
CLN3-240ENST00000631023 TRAM1Q15629 374 aa17.04■□□□□ 0.32
CLN3-240ENST00000631023 TBCEQ15813 527 aaPredicted RBP17.04■□□□□ 0.32
CLN3-240ENST00000631023 ASCL4Q6XD76 172 aa17.04■□□□□ 0.32
CLN3-240ENST00000631023 C9orf139Q6ZV77 190 aa17.04■□□□□ 0.32
CLN3-240ENST00000631023 CDH26Q8IXH8 852 aa17.04■□□□□ 0.32
CLN3-240ENST00000631023 OR4M1Q8NGD0 313 aa17.04■□□□□ 0.32
CLN3-240ENST00000631023 LHX4Q969G2 390 aa17.04■□□□□ 0.32
CLN3-240ENST00000631023 MGLLQ99685 303 aa17.04■□□□□ 0.32
CLN3-240ENST00000631023 METTL8Q9H825 291 aaKnown RBP17.04■□□□□ 0.32
CLN3-240ENST00000631023 PCDHB16Q9NRJ7 776 aa17.04■□□□□ 0.32
CLN3-240ENST00000631023 C19orf12Q9NSK7 152 aa17.04■□□□□ 0.32
CLN3-240ENST00000631023 ING4Q9UNL4 249 aa17.04■□□□□ 0.32
CLN3-240ENST00000631023 CENPVL3A0A0U1RRI6 287 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms