RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ZNF169Q14929 603 aaPredicted RBP12.38□□□□□ -0.43
VRK3-217ENST00000599538 ATXN7L3Q14CW9 347 aaPredicted RBP12.38□□□□□ -0.43
VRK3-217ENST00000599538 TBC1D28Q2M2D7 210 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 ACSF3Q4G176 576 aaPredicted RBP12.38□□□□□ -0.43
VRK3-217ENST00000599538 LPCAT3Q6P1A2 487 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 ZNF585AQ6P3V2 769 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 SLC22A25Q6T423 547 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 OR5A2Q8NGI9 324 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 SARAFQ96BY9 339 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 ZNF442Q9H7R0 627 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 RDH8Q9NYR8 311 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 EDARQ9UNE0 448 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 HSPB6O14558 160 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 SMPD2O60906 423 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 RHBDL1O75783 438 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 PGAM2P15259 253 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 PTGER4P35408 488 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 UBE2NP61088 152 aaKnown RBP12.38□□□□□ -0.43
VRK3-217ENST00000599538 SEM1Q6ZVN7 128 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 DPPA2Q7Z7J5 298 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 ZNF546Q86UE3 836 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 C17orf78Q8N4C9 275 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 IGHV3-64DA0A0J9YX35 117 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 C5orf51A6NDU8 294 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 ANKRD30BLA7E2S9 258 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 GMFBP60983 142 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 FGF12P61328 243 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 TGFBR3Q03167 851 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 C11orf87Q6NUJ2 197 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 C3P1Q6ZMU1 363 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 ASB13Q8WXK3 278 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 WNT2BQ93097 391 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 UBQLN2Q9UHD9 624 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 RP1L1Q8IWN7 2480 aaPredicted RBP12.37□□□□□ -0.43
VRK3-217ENST00000599538 IFNA7P01567 189 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 RPA2P15927 270 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 BEX5Q5H9J7 111 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 ELP2Q6IA86 826 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 WDR86Q86TI4 376 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 TMEM200AQ86VY9 491 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 RPRMLQ8N4K4 120 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 WDR31Q8NA23 367 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 EXTL1Q92935 676 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 HIST1H2AAQ96QV6 131 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 IRF2BPLQ9H1B7 796 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 WDR13Q9H1Z4 485 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 OPA3Q9H6K4 179 aa12.37□□□□□ -0.43
VRK3-217ENST00000599538 BSNQ9UPA5 3926 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 TRAPPC2LH3BP13 241 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 TNFSF13O75888 250 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 CALCRP30988 508 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 PPP1CBP62140 327 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 ALKAL2Q6UX46 152 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 ZNF610Q8N9Z0 462 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 OR5L1Q8NGL2 311 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 TOMM40LQ969M1 308 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 SCGB3A2Q96PL1 93 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 OPN3Q9H1Y3 402 aaPredicted RBP12.36□□□□□ -0.43
VRK3-217ENST00000599538 C12orf4Q9NQ89 552 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 PCDHB16Q9NRJ7 776 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 DECR2Q9NUI1 292 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 NECAP2Q9NVZ3 263 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 MPC1Q9Y5U8 109 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 ACACAQ13085 2346 aa12.36□□□□□ -0.43
VRK3-217ENST00000599538 RNF222A6NCQ9 220 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 LEUTXA8MZ59 168 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 PRKACAP17612 351 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 COX5AP20674 150 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 FXYD4P59646 89 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 IGSF11Q5DX21 431 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 DHRS11Q6UWP2 260 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 IGFL3Q6UXB1 125 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 FBXW12Q6X9E4 464 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 SAXO1Q8IYX7 474 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 SLC25A40Q8TBP6 338 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 OR10C1Q96KK4 312 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 CDH20Q9HBT6 801 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 COMMD9Q9P000 198 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 TNFSF18Q9UNG2 199 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 LHX6Q9UPM6 363 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 MAB21L2Q9Y586 359 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 SELEP16581 610 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 FCGR2CP31995 323 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 GNG3P63215 75 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 SURF2Q15527 256 aaPredicted RBP12.35□□□□□ -0.43
VRK3-217ENST00000599538 NHLRC3Q5JS37 347 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 MKXQ8IYA7 352 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 RBMXL3Q8N7X1 1067 aaKnown RBP12.35□□□□□ -0.43
VRK3-217ENST00000599538 OR6K3Q8NGY3 331 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 STARD4Q96DR4 205 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 OR51I2Q9H344 312 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 MBD2Q9UBB5 411 aa12.35□□□□□ -0.43
VRK3-217ENST00000599538 C14orf166Q9Y224 244 aaKnown RBP12.35□□□□□ -0.43
VRK3-217ENST00000599538 AHRRA9YTQ3 701 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 RP2O75695 350 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 CRHP06850 196 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 SLC25A4P12235 298 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 MPV17P39210 176 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 UCP2P55851 309 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 FGL1Q08830 312 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms