RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 LYNX1P0DP58 116 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 ELK1P19419 428 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 TNFRSF1AP19438 455 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 SCAND1P57086 179 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 RSU1Q15404 277 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 SLC22A6Q4U2R8 563 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 ELP2Q6IA86 826 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 MZT2AQ6P582 158 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 CMTM4Q8IZR5 234 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 GCSAMQ8N6F7 178 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 POC1AQ8NBT0 407 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 OR10Z1Q8NGY1 313 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 KCNG3Q8TAE7 436 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 LRRC29Q8WV35 223 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 AP3S1Q92572 193 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 YIPF5Q969M3 257 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 FAM46BQ96A09 425 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 SEH1LQ96EE3 360 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 CEP19Q96LK0 163 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 NRIP2Q9BQI9 281 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 MRI1Q9BV20 369 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 EGLN1Q9GZT9 426 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 C6orf62Q9GZU0 229 aaPredicted RBP7.91□□□□□ -1.14
TRIM28-208ENST00000597172 RAB1BQ9H0U4 201 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 WDR13Q9H1Z4 485 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 BANF2Q9H503 90 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 SAP30LQ9HAJ7 183 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 ELL3Q9HB65 397 aaPredicted RBP7.91□□□□□ -1.14
TRIM28-208ENST00000597172 HES4Q9HCC6 221 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 SMURF1Q9HCE7 757 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 RBFOX1Q9NWB1 397 aaKnown RBP7.91□□□□□ -1.14
TRIM28-208ENST00000597172 RAB22AQ9UL26 194 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 PPP1R3CQ9UQK1 317 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 ARFGEF3Q5TH69 2177 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 TRAPPC2LH3BP13 241 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 TPD52L2O43399 206 aaKnown RBP7.9□□□□□ -1.14
TRIM28-208ENST00000597172 CDC14BO60729 498 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 ZNF780AO75290 641 aaPredicted RBP7.9□□□□□ -1.14
TRIM28-208ENST00000597172 CRTAPO75718 401 aaPredicted RBP7.9□□□□□ -1.14
TRIM28-208ENST00000597172 LY6HO94772 140 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 CYB5R3P00387 301 aaPredicted RBP7.9□□□□□ -1.14
TRIM28-208ENST00000597172 EIF4EP06730 217 aaKnown RBP7.9□□□□□ -1.14
TRIM28-208ENST00000597172 BMP4P12644 408 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 RAB6AP20340 208 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 SERPINA2P20848 420 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 TNFSF8P32971 234 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 GPR176Q14439 515 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 ZNF181Q2M3W8 571 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 FAM201AQ5SY85 155 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 FAM120AOSQ5T036 256 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 CYB5R2Q6BCY4 276 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 OR2W3Q7Z3T1 314 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 LAX1Q8IWV1 398 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 FAM58AQ8N1B3 248 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 FAM89BQ8N5H3 189 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 SAMD12Q8N8I0 201 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 OR51T1Q8NGJ9 327 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 NEU4Q8WWR8 484 aaPredicted RBP7.9□□□□□ -1.14
TRIM28-208ENST00000597172 CCL17Q92583 94 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 PTX4Q96A99 478 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 CYYR1Q96J86 154 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 CMTM3Q96MX0 182 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 S100A13Q99584 98 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 LPAR5Q9H1C0 372 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 ABCG5Q9H222 651 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 HMG20AQ9NP66 347 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 ZNF581Q9P0T4 197 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 RNF7Q9UBF6 113 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 IL36RNQ9UBH0 155 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 POLDIP2Q9Y2S7 368 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 ETV7Q9Y603 341 aa7.9□□□□□ -1.14
TRIM28-208ENST00000597172 TENM3Q9P273 2699 aa7.9□□□□□ -1.15
TRIM28-208ENST00000597172 IGHV1-69-2A0A0G2JMI3 117 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 hCG_1807616A0A1W2PRN6 198 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 FOXI3A8MTJ6 420 aaPredicted RBP7.89□□□□□ -1.15
TRIM28-208ENST00000597172 SRRM5B3KS81 715 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 TMEM178BH3BS89 294 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 RGS5O15539 181 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 RP2O75695 350 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 ZNF205O95201 554 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 MPIG6BO95866 241 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 CYB5AP00167 134 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 CSTBP04080 98 aaKnown RBP7.89□□□□□ -1.15
TRIM28-208ENST00000597172 GTF2F2P13984 249 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 MGMTP16455 207 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 RANBP1P43487 201 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 CAPZA1P52907 286 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 TMEM50BP56557 158 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 GMFBP60983 142 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 FGF12P61328 243 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 RPS27AP62979 156 aaKnown RBP7.89□□□□□ -1.15
TRIM28-208ENST00000597172 PDCD1Q15116 288 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 PIGYQ3MUY2 71 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 MOGAT2Q3SYC2 334 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 UBE2NLQ5JXB2 153 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 TREML4Q6UXN2 200 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 ACP7Q6ZNF0 438 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 RTN4RL2Q86UN3 420 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 OSR2Q8N2R0 312 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 DTX3Q8N9I9 347 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms