RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 GJC3Q8NFK1 279 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 NEK7Q8TDX7 302 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 ALKBH3Q96Q83 286 aaPredicted RBP13.34□□□□□ -0.27
UPF1-204ENST00000596842 RARRES3Q9UL19 164 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 DDTP30046 118 aa13.33□□□□□ -0.27
UPF1-204ENST00000596842 SLC25A47Q6Q0C1 308 aa13.33□□□□□ -0.27
UPF1-204ENST00000596842 TMEM156Q8N614 296 aa13.33□□□□□ -0.27
UPF1-204ENST00000596842 SMOC1Q9H4F8 434 aa13.33□□□□□ -0.27
UPF1-204ENST00000596842 GEMIN2O14893 280 aaKnown RBP13.33□□□□□ -0.28
UPF1-204ENST00000596842 JTBO76095 146 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 OR7C1O76099 320 aaPredicted RBP13.33□□□□□ -0.28
UPF1-204ENST00000596842 SNRPCP09234 159 aaKnown RBP13.33□□□□□ -0.28
UPF1-204ENST00000596842 GRB2P62993 217 aaKnown RBP13.33□□□□□ -0.28
UPF1-204ENST00000596842 HABP2Q14520 560 aaPredicted RBP13.33□□□□□ -0.28
UPF1-204ENST00000596842 GUK1Q16774 197 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 CDPF1Q6NVV7 123 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 BORCS8Q96FH0 119 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 FAM212BQ9NTI7 297 aaPredicted RBP13.33□□□□□ -0.28
UPF1-204ENST00000596842 TREM2Q9NZC2 230 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 AK3Q9UIJ7 227 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 C7orf77A4D0Y5 90 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 UMAD1C9J7I0 102 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 DHRS3O75911 302 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 ONECUT2O95948 504 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 GSK3AP49840 483 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 RHEBQ15382 184 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 RAB30Q15771 203 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 OR52M1Q8NGK5 317 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 PIGCQ92535 297 aa13.33□□□□□ -0.28
UPF1-204ENST00000596842 TNFSF11O14788 317 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 BCAT2O15382 392 aaPredicted RBP13.32□□□□□ -0.28
UPF1-204ENST00000596842 MBPP02686 304 aaPredicted RBP13.32□□□□□ -0.28
UPF1-204ENST00000596842 B4GALT1P15291 398 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 RPL29P47914 159 aaKnown RBP13.32□□□□□ -0.28
UPF1-204ENST00000596842 HNF4GQ14541 408 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 OR6X1Q8NH79 312 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 SHDQ96IW2 340 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 LIME1Q9H400 295 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 PNRC2Q9NPJ4 139 aaKnown RBP13.32□□□□□ -0.28
UPF1-204ENST00000596842 DKKL1Q9UK85 242 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 FIGNL2A6NMB9 653 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 ZNF705FA8MVS1 300 aaPredicted RBP13.32□□□□□ -0.28
UPF1-204ENST00000596842 CDRT15L2A8MXV6 281 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 ZNF705DP0CH99 300 aaPredicted RBP13.32□□□□□ -0.28
UPF1-204ENST00000596842 ZNF705BP0CI00 300 aaPredicted RBP13.32□□□□□ -0.28
UPF1-204ENST00000596842 RPS2P15880 293 aaKnown RBP13.32□□□□□ -0.28
UPF1-204ENST00000596842 MPZP25189 248 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 SULT1A2P50226 295 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 DVL1P1P54792 670 aaPredicted RBP13.32□□□□□ -0.28
UPF1-204ENST00000596842 RHBDD2Q6NTF9 364 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 ZNF774Q6NX45 483 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 FBXL14Q8N1E6 418 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 OR2M3Q8NG83 312 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 SLC25A43Q8WUT9 341 aaPredicted RBP13.32□□□□□ -0.28
UPF1-204ENST00000596842 SAT2Q96F10 170 aaPredicted RBP13.32□□□□□ -0.28
UPF1-204ENST00000596842 SMIM8Q96KF7 97 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 GPR61Q9BZJ8 451 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 ANXA10Q9UJ72 324 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 ATG2AQ2TAZ0 1938 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 DNAJC13O75165 2243 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 SLC34A2O95436 690 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 CD37P11049 281 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 LHFPL1Q86WI0 220 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 NFAM1Q8NET5 270 aaPredicted RBP13.32□□□□□ -0.28
UPF1-204ENST00000596842 UCK1Q9HA47 277 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 DMRT1Q9Y5R6 373 aa13.32□□□□□ -0.28
UPF1-204ENST00000596842 NCOR1O75376 2440 aa13.31□□□□□ -0.28
UPF1-204ENST00000596842 BORCS7-ASMTA0A0B4J1R7 106 aa13.31□□□□□ -0.28
UPF1-204ENST00000596842 ACKR3P25106 362 aa13.31□□□□□ -0.28
UPF1-204ENST00000596842 ZNF385CQ66K41 422 aaPredicted RBP13.31□□□□□ -0.28
UPF1-204ENST00000596842 ZNF574Q6ZN55 896 aaPredicted RBP13.31□□□□□ -0.28
UPF1-204ENST00000596842 ZFP62Q8NB50 900 aaPredicted RBP13.31□□□□□ -0.28
UPF1-204ENST00000596842 GTF3AQ92664 365 aaKnown RBP13.31□□□□□ -0.28
UPF1-204ENST00000596842 SPACA9Q96E40 222 aaPredicted RBP13.31□□□□□ -0.28
UPF1-204ENST00000596842 COLCA2A8K830 154 aa13.31□□□□□ -0.28
UPF1-204ENST00000596842 SERPINE3A8MV23 424 aa13.31□□□□□ -0.28
UPF1-204ENST00000596842 MDKP21741 143 aaPredicted RBP13.31□□□□□ -0.28
UPF1-204ENST00000596842 RPUSD3Q6P087 351 aaKnown RBP13.31□□□□□ -0.28
UPF1-204ENST00000596842 METTL9Q9H1A3 318 aa13.31□□□□□ -0.28
UPF1-204ENST00000596842 ATXN7O15265 892 aaPredicted RBP13.31□□□□□ -0.28
UPF1-204ENST00000596842 DEDDO75618 318 aa13.31□□□□□ -0.28
UPF1-204ENST00000596842 TRAPPC6AO75865 159 aa13.31□□□□□ -0.28
UPF1-204ENST00000596842 OR2C1O95371 312 aa13.31□□□□□ -0.28
UPF1-204ENST00000596842 TAS2R60P59551 318 aa13.31□□□□□ -0.28
UPF1-204ENST00000596842 HERV-K104P61576 105 aa13.31□□□□□ -0.28
UPF1-204ENST00000596842 YRDCQ86U90 279 aaKnown RBP13.31□□□□□ -0.28
UPF1-204ENST00000596842 MARS2Q96GW9 593 aaKnown RBP13.31□□□□□ -0.28
UPF1-204ENST00000596842 SIRT7Q9NRC8 400 aa13.31□□□□□ -0.28
UPF1-204ENST00000596842 SFTPCP11686 197 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 PPP1CCP36873 323 aaKnown RBP13.3□□□□□ -0.28
UPF1-204ENST00000596842 HAGHQ16775 308 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 HIST1H2BAQ96A08 127 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 C14orf144Q96I85 54 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 NELFAQ9H3P2 528 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 TAAR5O14804 337 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 DHHO43323 396 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 FCGR3AP08637 254 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 DUSP1P28562 367 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 PPA1Q15181 289 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 SPTSSAQ969W0 71 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms