RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 TTC23Q5W5X9 447 aa12.46□□□□□ -0.41
TRIM28-203ENST00000593582 SERPINA12Q8IW75 414 aa12.46□□□□□ -0.41
TRIM28-203ENST00000593582 C11orf42Q8N5U0 333 aa12.46□□□□□ -0.41
TRIM28-203ENST00000593582 ZSCAN4Q8NAM6 433 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-203ENST00000593582 BEND2Q8NDZ0 799 aa12.46□□□□□ -0.41
TRIM28-203ENST00000593582 OR5R1Q8NH85 324 aa12.46□□□□□ -0.41
TRIM28-203ENST00000593582 TSEN15Q8WW01 171 aaKnown RBP12.46□□□□□ -0.41
TRIM28-203ENST00000593582 CYGBQ8WWM9 190 aa12.46□□□□□ -0.41
TRIM28-203ENST00000593582 SNX22Q96L94 193 aa12.46□□□□□ -0.41
TRIM28-203ENST00000593582 PDCD1LG2Q9BQ51 273 aa12.46□□□□□ -0.41
TRIM28-203ENST00000593582 ZCCHC4Q9H5U6 513 aa12.46□□□□□ -0.41
TRIM28-203ENST00000593582 SEBOXQ9HB31 216 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-203ENST00000593582 FGF20Q9NP95 211 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-203ENST00000593582 VPREB3Q9UKI3 123 aa12.46□□□□□ -0.41
TRIM28-203ENST00000593582 DHDHQ9UQ10 334 aa12.46□□□□□ -0.41
TRIM28-203ENST00000593582 IRGMA1A4Y4 181 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 LIMS3P0CW19 117 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 LIMS4P0CW20 117 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 ZNF728P0DKX0 622 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 PRKACAP17612 351 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 DCKP27707 260 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 PEX2P28328 305 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 DUSP1P28562 367 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 EDDM3AQ14507 147 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 ZNF146Q15072 292 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 RCN1Q15293 331 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 OLFML2AQ68BL7 652 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 TMPRSS11AQ6ZMR5 421 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 C17orf107Q6ZR85 190 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 PACRGLQ8N7B6 248 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 RFT1Q96AA3 541 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 SPACA5Q96QH8 159 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 JAM3Q9BX67 310 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 IL36RNQ9UBH0 155 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 PCDHGB5Q9Y5G0 923 aa12.45□□□□□ -0.42
TRIM28-203ENST00000593582 TRRAPQ9Y4A5 3859 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 hADV38S2A0JD32 116 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 TMEM82A0PJX8 343 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 CLPSL1A2RUU4 121 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 C17orf98A8MV24 154 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 SULT1B1O43704 296 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 ALX3O95076 343 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 CLIC3O95833 236 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 RBP4P02753 201 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 HCKP08631 526 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 CALCBP10092 127 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 COX7A1P24310 79 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 SNU13P55769 128 aaKnown RBP12.44□□□□□ -0.42
TRIM28-203ENST00000593582 LGALS4P56470 323 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 MEF2CQ06413 473 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-203ENST00000593582 GRK1Q15835 563 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 CCDC58Q4VC31 144 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 DHRS7BQ6IAN0 325 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-203ENST00000593582 ZNF782Q6ZMW2 699 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-203ENST00000593582 SAXO1Q8IYX7 474 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 PARP16Q8N5Y8 322 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 SETD9Q8NE22 299 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 OR5D18Q8NGL1 313 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 PPP1R35Q8TAP8 253 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 CNIH3Q8TBE1 160 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 CPNE2Q96FN4 548 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-203ENST00000593582 CHST6Q9GZX3 395 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 RHOFQ9HBH0 211 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 HMG20AQ9NP66 347 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 GSTK1Q9Y2Q3 226 aa12.44□□□□□ -0.42
TRIM28-203ENST00000593582 SH2D1BO14796 132 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 KDM4BO94953 1096 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 MYL12AP19105 171 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 TGFBR2P37173 567 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 ETV1P50549 477 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 GTF2A1P52655 376 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-203ENST00000593582 DLX6P56179 175 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 KISS1Q15726 138 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 PRR31Q5SQ13 230 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 RPL22L1Q6P5R6 122 aaKnown RBP12.43□□□□□ -0.42
TRIM28-203ENST00000593582 DHRSXQ8N5I4 330 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 OR52N4Q8NGI2 321 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 OR13D1Q8NGV5 346 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 C17orf50Q8WW18 174 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 WFDC12Q8WWY7 111 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 ZNF714Q96N38 554 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 SSX3Q99909 188 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 ZNF696Q9H7X3 374 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 EXOSC4Q9NPD3 245 aaKnown RBP12.43□□□□□ -0.42
TRIM28-203ENST00000593582 RNF114Q9Y508 228 aa12.43□□□□□ -0.42
TRIM28-203ENST00000593582 IGKV1-12A0A0C4DH73 117 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 MEX3AA1L020 520 aaKnown RBP12.42□□□□□ -0.42
TRIM28-203ENST00000593582 H3BUX3 64 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 MGST3O14880 152 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 MAGEB3O15480 346 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 PSPNO60542 156 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 IGKV1D-12P01611 117 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 TMEM225BP0DP42 221 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 BMXP51813 675 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 IL18R1Q13478 541 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 MED21Q13503 144 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 AANATQ16613 207 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 LRRC75BQ2VPJ9 315 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 LINC01006Q8NI28 216 aa12.42□□□□□ -0.42
TRIM28-203ENST00000593582 GPR148Q8TDV2 347 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms