RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 RNF166Q96A37 237 aaPredicted RBP10.12□□□□□ -0.79
SS18-225ENST00000585121 SNX22Q96L94 193 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 ERVK13-1Q9NX77 482 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 C1RLQ9NZP8 487 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 MYRFQ9Y2G1 1151 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 PCDHGB5Q9Y5G0 923 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 IRGMA1A4Y4 181 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 OR4C45A6NMZ5 311 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 SPRY1O43609 319 aaPredicted RBP10.12□□□□□ -0.79
SS18-225ENST00000585121 HAND1O96004 215 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 PIPP12273 146 aaPredicted RBP10.12□□□□□ -0.79
SS18-225ENST00000585121 PRKACAP17612 351 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 GABRR1P24046 479 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 PDZK1IP1Q13113 114 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 OLFML2AQ68BL7 652 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 PNKDQ8N490 385 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 OR52I1Q8NGK6 324 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 OR5D14Q8NGL3 314 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 OR13C9Q8NGT0 318 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 OR5AK2Q8NH90 309 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 ZCCHC4Q9H5U6 513 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 ISG20L2Q9H9L3 353 aaKnown RBP10.12□□□□□ -0.79
SS18-225ENST00000585121 SEBOXQ9HB31 216 aaPredicted RBP10.12□□□□□ -0.79
SS18-225ENST00000585121 MRPS18AQ9NVS2 196 aaKnown RBP10.12□□□□□ -0.79
SS18-225ENST00000585121 VPREB3Q9UKI3 123 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 DHDHQ9UQ10 334 aa10.12□□□□□ -0.79
SS18-225ENST00000585121 IGKV1-9A0A0C4DH69 117 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 TRBV2A0A0J9YWF9 115 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 CLPSL1A2RUU4 121 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 F8VVB4 439 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 F8VWA3 439 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 MT-ND2P03891 347 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 BCL3P20749 454 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 MYF6P23409 242 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 IL18R1Q13478 541 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 DHRS7BQ6IAN0 325 aaPredicted RBP10.11□□□□□ -0.79
SS18-225ENST00000585121 TMPRSS11AQ6ZMR5 421 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 SERPINA12Q8IW75 414 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 OR8H2Q8N162 312 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 BEND2Q8NDZ0 799 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 OR51A4Q8NGJ6 313 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 OR13D1Q8NGV5 346 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 TSEN15Q8WW01 171 aaKnown RBP10.11□□□□□ -0.79
SS18-225ENST00000585121 CYGBQ8WWM9 190 aa10.11□□□□□ -0.79
SS18-225ENST00000585121 hADV38S2A0JD32 116 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 MAGEA13PA6NCF6 341 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 SH2D1BO14796 132 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 MAGEB3O15480 346 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 ZNF737O75373 536 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 HCKP08631 526 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 ZNF728P0DKX0 622 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 CCL3L1P16619 93 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 COX7A1P24310 79 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 DCKP27707 260 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 TGFBR2P37173 567 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 NPBWR2P48146 333 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 MEF2CQ06413 473 aaPredicted RBP10.1□□□□□ -0.79
SS18-225ENST00000585121 EDDM3AQ14507 147 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 ZNF273Q14593 569 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 GRK1Q15835 563 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 TAF9Q16594 264 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 SPIN3Q5JUX0 258 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 SETD9Q8NE22 299 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 OR10AC1Q8NH08 325 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 RFT1Q96AA3 541 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 CPNE2Q96FN4 548 aaPredicted RBP10.1□□□□□ -0.79
SS18-225ENST00000585121 CNBD2Q96M20 576 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 ZNF696Q9H7X3 374 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 RHOFQ9HBH0 211 aa10.1□□□□□ -0.79
SS18-225ENST00000585121 FGF20Q9NP95 211 aaPredicted RBP10.1□□□□□ -0.79
SS18-225ENST00000585121 RBFOX1Q9NWB1 397 aaKnown RBP10.1□□□□□ -0.79
SS18-225ENST00000585121 CHCHD3Q9NX63 227 aaKnown RBP10.1□□□□□ -0.79
SS18-225ENST00000585121 MGAM2Q2M2H8 2515 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 FUOMA2VDF0 154 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 C17orf98A8MV24 154 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 SULT1B1O43704 296 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 ALX3O95076 343 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 ZFPL1O95159 310 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 RBP4P02753 201 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 MYL12AP19105 171 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 SNU13P55769 128 aaKnown RBP10.09□□□□□ -0.79
SS18-225ENST00000585121 RELBQ01201 579 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 ZNF146Q15072 292 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 CCDC58Q4VC31 144 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 HCP5Q6MZN7 132 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 ZNF782Q6ZMW2 699 aaPredicted RBP10.09□□□□□ -0.79
SS18-225ENST00000585121 SAXO1Q8IYX7 474 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 APH1BQ8WW43 257 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 ZNF714Q96N38 554 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 SSX3Q99909 188 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 JAM3Q9BX67 310 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 HMG20AQ9NP66 347 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 EXOSC4Q9NPD3 245 aaKnown RBP10.09□□□□□ -0.79
SS18-225ENST00000585121 GSTK1Q9Y2Q3 226 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 RNF114Q9Y508 228 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 HSPE1-MOB4S4R3N1 261 aa10.09□□□□□ -0.79
SS18-225ENST00000585121 TRRAPQ9Y4A5 3859 aa10.08□□□□□ -0.8
SS18-225ENST00000585121 TMEM82A0PJX8 343 aa10.08□□□□□ -0.8
SS18-225ENST00000585121 E9PI62 339 aa10.08□□□□□ -0.8
SS18-225ENST00000585121 MGST3O14880 152 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms