RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 OR8H2Q8N162 312 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 ACBD7Q8N6N7 88 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 DNAAF1Q8NEP3 725 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 OR51A4Q8NGJ6 313 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 OR4C13Q8NGP0 309 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 RFT1Q96AA3 541 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 LGALS12Q96DT0 336 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 EXOGQ9Y2C4 368 aaKnown RBP16.57■□□□□ 0.24
SHMT1-209ENST00000582653 NOTCH1P46531 2555 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 PRKDCP78527 4128 aaKnown RBP16.56■□□□□ 0.24
SHMT1-209ENST00000582653 ARG1P05089 322 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 HTR1AP08908 422 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 ZNF20P17024 532 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 LDLRAD2Q5SZI1 272 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 ZFP1Q6P2D0 407 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 CCDC121Q6ZUS5 278 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 LHFPL3Q86UP9 236 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 FAM58AQ8N1B3 248 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 OR2T6Q8NHC8 308 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 CFHR4Q92496 578 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 PELI1Q96FA3 418 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 C4orf36Q96KX1 117 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 GMPPBQ9Y5P6 360 aa16.56■□□□□ 0.24
SHMT1-209ENST00000582653 A0A0G2JK05 382 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 VGLL3A8MV65 326 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 CHST1O43916 411 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 PSPNO60542 156 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 IGHV1-8P0DP01 117 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 PRKACAP17612 351 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 GABRB1P18505 474 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 GABRR1P24046 479 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 ZNF91Q05481 1191 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 GRK1Q15835 563 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 UTS2BQ765I0 119 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 OR4S1Q8NGB4 309 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 OR13D1Q8NGV5 346 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 ZNF714Q96N38 554 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 SPACA5Q96QH8 159 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 SLC29A1Q99808 456 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 CDCA4Q9BXL8 241 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 ISG20L2Q9H9L3 353 aaKnown RBP16.55■□□□□ 0.24
SHMT1-209ENST00000582653 AMBNQ9NP70 447 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 MYRFQ9Y2G1 1151 aa16.55■□□□□ 0.24
SHMT1-209ENST00000582653 IGKV1-12A0A0C4DH73 117 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 TRBV2A0A0J9YWF9 115 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 OR4C45A6NMZ5 311 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 ODF3BA8MYP8 253 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 CYB5AP00167 134 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 IGKV1D-12P01611 117 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 PRKACBP22694 351 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 PEX2P28328 305 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 CCR9P51686 369 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 MEF2CQ06413 473 aaPredicted RBP16.54■□□□□ 0.24
SHMT1-209ENST00000582653 PDZK1IP1Q13113 114 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 DYNC1I2Q13409 638 aaKnown RBP16.54■□□□□ 0.24
SHMT1-209ENST00000582653 ALKBH1Q13686 389 aaKnown RBP16.54■□□□□ 0.24
SHMT1-209ENST00000582653 LHFPL2Q6ZUX7 228 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 Q8IYB0 196 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 ENTHD1Q8IYW4 607 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 OR13C3Q8NGS6 347 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 MALSU1Q96EH3 234 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 OPALINQ96PE5 141 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 NPFFR1Q9GZQ6 430 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 HHLA2Q9UM44 414 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 FOXJ3Q9UPW0 622 aa16.54■□□□□ 0.24
SHMT1-209ENST00000582653 hADV38S2A0JD32 116 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 RBP4P02753 201 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 OCM2P0CE71 109 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 OCMP0CE72 109 aaPredicted RBP16.53■□□□□ 0.24
SHMT1-209ENST00000582653 DBTP11182 482 aaKnown RBP16.53■□□□□ 0.24
SHMT1-209ENST00000582653 ZNF146Q15072 292 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 FAM189A2Q15884 450 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 SSX2Q16385 188 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 ZNF626Q68DY1 528 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 CCBE1Q6UXH8 406 aaPredicted RBP16.53■□□□□ 0.24
SHMT1-209ENST00000582653 C1QL4Q86Z23 238 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 ZNF676Q8N7Q3 588 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 C11orf44Q8N8P7 122 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 OR11H6Q8NGC7 330 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 OR5D18Q8NGL1 313 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 OR13C9Q8NGT0 318 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 SPSB1Q96BD6 273 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 NKX3-1Q99801 234 aaPredicted RBP16.53■□□□□ 0.24
SHMT1-209ENST00000582653 ALG8Q9BVK2 526 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 SEBOXQ9HB31 216 aaPredicted RBP16.53■□□□□ 0.24
SHMT1-209ENST00000582653 HMG20AQ9NP66 347 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 GSTK1Q9Y2Q3 226 aa16.53■□□□□ 0.24
SHMT1-209ENST00000582653 TBL2Q9Y4P3 447 aaKnown RBP16.53■□□□□ 0.24
SHMT1-209ENST00000582653 TET2Q6N021 2002 aaPredicted RBP16.52■□□□□ 0.24
SHMT1-209ENST00000582653 SNTNA6NMZ2 147 aa16.52■□□□□ 0.24
SHMT1-209ENST00000582653 SIRPB1O00241 398 aa16.52■□□□□ 0.24
SHMT1-209ENST00000582653 JUNBP17275 347 aaPredicted RBP16.52■□□□□ 0.24
SHMT1-209ENST00000582653 OR3A1P47881 315 aa16.52■□□□□ 0.24
SHMT1-209ENST00000582653 ACTA2P62736 377 aa16.52■□□□□ 0.24
SHMT1-209ENST00000582653 ACTG2P63267 376 aa16.52■□□□□ 0.24
SHMT1-209ENST00000582653 GALEQ14376 348 aa16.52■□□□□ 0.24
SHMT1-209ENST00000582653 KLHDC1Q8N7A1 406 aa16.52■□□□□ 0.24
SHMT1-209ENST00000582653 RHOXF1Q8NHV9 184 aa16.52■□□□□ 0.24
SHMT1-209ENST00000582653 E9PI62 339 aa16.51■□□□□ 0.23
SHMT1-209ENST00000582653 MMP23AO75900 390 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms