RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 MPV17LQ2QL34 196 aa8.42□□□□□ -1.06
CCDC40-212ENST00000574799 SSX7Q7RTT5 188 aa8.42□□□□□ -1.06
CCDC40-212ENST00000574799 CTHRC1Q96CG8 243 aa8.42□□□□□ -1.06
CCDC40-212ENST00000574799 RPUSD4Q96CM3 377 aaKnown RBP8.42□□□□□ -1.06
CCDC40-212ENST00000574799 LPAR5Q9H1C0 372 aa8.42□□□□□ -1.06
CCDC40-212ENST00000574799 OR10A5Q9H207 317 aa8.42□□□□□ -1.06
CCDC40-212ENST00000574799 PATZ1Q9HBE1 687 aaKnown RBP8.42□□□□□ -1.06
CCDC40-212ENST00000574799 LYRM4Q9HD34 91 aa8.42□□□□□ -1.06
CCDC40-212ENST00000574799 FKBP11Q9NYL4 201 aa8.42□□□□□ -1.06
CCDC40-212ENST00000574799 FOXD3Q9UJU5 478 aaPredicted RBP8.42□□□□□ -1.06
CCDC40-212ENST00000574799 HS3ST3A1Q9Y663 406 aa8.42□□□□□ -1.06
CCDC40-212ENST00000574799 FRYQ5TBA9 3013 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 LOC101059948A0A1B0GTJ6 334 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 CDC14BO60729 498 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 OPN1MWP04001 364 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 SRP19P09132 144 aaKnown RBP8.41□□□□□ -1.06
CCDC40-212ENST00000574799 OPN1MW2P0DN77 364 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 OPN1MW3P0DN78 364 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 NKX2-1P43699 371 aaPredicted RBP8.41□□□□□ -1.06
CCDC40-212ENST00000574799 MLF1P58340 268 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 YPEL5P62699 121 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 RPS4XP62701 263 aaKnown RBP8.41□□□□□ -1.06
CCDC40-212ENST00000574799 POU3F1Q03052 451 aaPredicted RBP8.41□□□□□ -1.06
CCDC40-212ENST00000574799 CARD17Q5XLA6 110 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 ASPHD2Q6ICH7 369 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 OR5C1Q8NGR4 320 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 IL22RA2Q969J5 263 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 ANKRD9Q96BM1 317 aaPredicted RBP8.41□□□□□ -1.06
CCDC40-212ENST00000574799 SMIM7Q9BQ49 75 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 NUDT22Q9BRQ3 303 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 TMEM208Q9BTX3 173 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 LRRC61Q9BV99 259 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 PBOV1Q9GZY1 135 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 PARD6AQ9NPB6 346 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 FUT9Q9Y231 359 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 MPDZO75970 2070 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 TRAV36DV7A0A075B6V5 113 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 SIAH2O43255 324 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 DLEU1O43261 78 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 GCGP01275 180 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 CLPSP04118 112 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 CLN3Q13286 438 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 ABCA7Q8IZY2 2146 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 OR2C3Q8N628 320 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 RLN3Q8WXF3 142 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 EMC6Q9BV81 110 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 TPSD1Q9BZJ3 242 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 WFDC1Q9HC57 220 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 CHST11Q9NPF2 352 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 PCNX3Q9H6A9 2034 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 A0A0U1RQK1 487 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 A0A1W2PR77 199 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 MKRN2OSH3BPM6 223 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 NPSP0C0P6 89 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 EPHA1P21709 976 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 EWSR1Q01844 656 aaKnown RBP eCLIP8.41□□□□□ -1.06
CCDC40-212ENST00000574799 KIR2DS3Q14952 304 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 ZNF141Q15928 474 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 AADACL3Q5VUY0 350 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 LRRC18Q8N456 261 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 OR6X1Q8NH79 312 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 SLAMF6Q96DU3 332 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 SMDT1Q9H4I9 107 aa8.41□□□□□ -1.06
CCDC40-212ENST00000574799 URB1O60287 2271 aaKnown RBP8.4□□□□□ -1.06
CCDC40-212ENST00000574799 IGHV1OR15-9A0A0B4J2B8 117 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 H3BP45 60 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 IFNA1P01562 189 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 PGCP20142 388 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 HSD17B7P56937 341 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 ARL6IP1Q15041 203 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 TMEM176BQ3YBM2 270 aaPredicted RBP8.4□□□□□ -1.06
CCDC40-212ENST00000574799 TMEM41BQ5BJD5 291 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 PLAC9Q5JTB6 97 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 ZNF787Q6DD87 383 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 FAM57BQ71RH2 274 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 SLC35E3Q7Z769 313 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 ATG4DQ86TL0 474 aaPredicted RBP8.4□□□□□ -1.06
CCDC40-212ENST00000574799 BEND2Q8NDZ0 799 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 ZNF524Q96C55 264 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 MMABQ96EY8 250 aaPredicted RBP8.4□□□□□ -1.06
CCDC40-212ENST00000574799 PGAM5Q96HS1 289 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 SHDQ96IW2 340 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 MS4A10Q96PG2 267 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 BSNQ9UPA5 3926 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 UTS2O95399 124 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 APOBEC1P41238 236 aaKnown RBP8.4□□□□□ -1.06
CCDC40-212ENST00000574799 FGF8P55075 233 aaPredicted RBP8.4□□□□□ -1.06
CCDC40-212ENST00000574799 INSM1Q01101 510 aaPredicted RBP8.4□□□□□ -1.06
CCDC40-212ENST00000574799 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.4□□□□□ -1.06
CCDC40-212ENST00000574799 LINC00114Q6XXX2 140 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 DBX2Q6ZNG2 339 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 CA13Q8N1Q1 262 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 RBMXL1Q96E39 390 aaKnown RBP8.4□□□□□ -1.06
CCDC40-212ENST00000574799 GPR84Q9NQS5 396 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 DMXL1Q9Y485 3027 aa8.4□□□□□ -1.06
CCDC40-212ENST00000574799 A0A087WWC5 75 aa8.4□□□□□ -1.07
CCDC40-212ENST00000574799 HSD17B6O14756 317 aa8.4□□□□□ -1.07
CCDC40-212ENST00000574799 ASAH2BP0C7U1 165 aa8.4□□□□□ -1.07
CCDC40-212ENST00000574799 FCGR2AP12318 317 aa8.4□□□□□ -1.07
CCDC40-212ENST00000574799 COL10A1Q03692 680 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms