RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 BLCAPP62952 87 aa12□□□□□ -0.49
CLN3-236ENST00000568558 ACTG2P63267 376 aa12□□□□□ -0.49
CLN3-236ENST00000568558 ACTC1P68032 377 aa12□□□□□ -0.49
CLN3-236ENST00000568558 ACTA1P68133 377 aa12□□□□□ -0.49
CLN3-236ENST00000568558 EDDM3AQ14507 147 aa12□□□□□ -0.49
CLN3-236ENST00000568558 MINOS1Q5TGZ0 78 aa12□□□□□ -0.49
CLN3-236ENST00000568558 CBR4Q8N4T8 237 aa12□□□□□ -0.49
CLN3-236ENST00000568558 YIPF7Q8N8F6 280 aa12□□□□□ -0.49
CLN3-236ENST00000568558 MRAPQ8TCY5 172 aa12□□□□□ -0.49
CLN3-236ENST00000568558 OR5M11Q96RB7 305 aa12□□□□□ -0.49
CLN3-236ENST00000568558 TBX5Q99593 518 aa12□□□□□ -0.49
CLN3-236ENST00000568558 CHST5Q9GZS9 411 aa12□□□□□ -0.49
CLN3-236ENST00000568558 NECAP2Q9NVZ3 263 aa12□□□□□ -0.49
CLN3-236ENST00000568558 HILPDAQ9Y5L2 63 aa12□□□□□ -0.49
CLN3-236ENST00000568558 MINOS1-NBL1R4GNA1 71 aa12□□□□□ -0.49
CLN3-236ENST00000568558 hADV38S2A0JD32 116 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 PEX14O75381 377 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 INMTO95050 263 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 VDAC2P45880 294 aaPredicted RBP11.99□□□□□ -0.49
CLN3-236ENST00000568558 TMEM95Q3KNT9 176 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 ZIK1Q3SY52 487 aaPredicted RBP11.99□□□□□ -0.49
CLN3-236ENST00000568558 ARSJQ5FYB0 599 aaPredicted RBP11.99□□□□□ -0.49
CLN3-236ENST00000568558 SLC25A26Q70HW3 274 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 EGFL6Q8IUX8 553 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 PQLC1Q8N2U9 271 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 ZNF676Q8N7Q3 588 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 TPRX1Q8N7U7 411 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 OR52N4Q8NGI2 321 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 EMG1Q92979 244 aaKnown RBP11.99□□□□□ -0.49
CLN3-236ENST00000568558 PHF21AQ96BD5 680 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 BORCS8Q96FH0 119 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 MBOAT4Q96T53 435 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 SLC29A1Q99808 456 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 SEBOXQ9HB31 216 aaPredicted RBP11.99□□□□□ -0.49
CLN3-236ENST00000568558 AURKAIP1Q9NWT8 199 aaPredicted RBP11.99□□□□□ -0.49
CLN3-236ENST00000568558 IL36RNQ9UBH0 155 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 LINC00312Q9Y6C7 94 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 SESN1Q9Y6P5 492 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 DNAH9Q9NYC9 4486 aa11.99□□□□□ -0.49
CLN3-236ENST00000568558 IGHV2-26A0A0B4J1V2 119 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 E9PQ18 207 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 ALX3O95076 343 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 HAND1O96004 215 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 IGHA1P01876 353 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 ALDOBP05062 364 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 AZGP1P25311 298 aaKnown RBP11.98□□□□□ -0.49
CLN3-236ENST00000568558 PEX2P28328 305 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 ALDH3A2P51648 485 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 LOXL3P58215 753 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 ZNF91Q05481 1191 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 SLC34A1Q06495 639 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 GRK1Q15835 563 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 CCDC54Q8NEL0 328 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 NDNFQ8TB73 568 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 SGCDQ92629 289 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 OCSTAMPQ9BR26 566 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 CHST6Q9GZX3 395 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 TMEM133Q9H2Q1 129 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 WARS2Q9UGM6 360 aaKnown RBP11.98□□□□□ -0.49
CLN3-236ENST00000568558 ENOPH1Q9UHY7 261 aa11.98□□□□□ -0.49
CLN3-236ENST00000568558 A0A1W2PQL4 384 aaPredicted RBP11.97□□□□□ -0.49
CLN3-236ENST00000568558 METTL15A6NJ78 407 aa11.97□□□□□ -0.49
CLN3-236ENST00000568558 FAM90A22PA8MWA6 464 aa11.97□□□□□ -0.49
CLN3-236ENST00000568558 PSPNO60542 156 aa11.97□□□□□ -0.49
CLN3-236ENST00000568558 OR2T7P0C7T2 308 aa11.97□□□□□ -0.49
CLN3-236ENST00000568558 NPBWR2P48146 333 aa11.97□□□□□ -0.49
CLN3-236ENST00000568558 Q8IYB0 196 aa11.97□□□□□ -0.49
CLN3-236ENST00000568558 C10orf67Q8IYJ2 551 aa11.97□□□□□ -0.49
CLN3-236ENST00000568558 ENTHD1Q8IYW4 607 aa11.97□□□□□ -0.49
CLN3-236ENST00000568558 PRSS35Q8N3Z0 413 aa11.97□□□□□ -0.49
CLN3-236ENST00000568558 C10orf35Q96D05 121 aa11.97□□□□□ -0.49
CLN3-236ENST00000568558 ADI1Q9BV57 179 aa11.97□□□□□ -0.49
CLN3-236ENST00000568558 CLEC7AQ9BXN2 247 aa11.97□□□□□ -0.49
CLN3-236ENST00000568558 LOC107986453A0A1B0GWG9 222 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 SULT1C4O75897 302 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 APOL3O95236 402 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 BAG2O95816 211 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 SERPINA3P01011 423 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 GABRR1P24046 479 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 HTR1FP30939 366 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 RBP2P50120 134 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 CD83Q01151 205 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 ZNF146Q15072 292 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 FOXB2Q5VYV0 432 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 ZBTB49Q6ZSB9 765 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 DNAAF1Q8NEP3 725 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 OR10H4Q8NGA5 316 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 OR4P4Q8NGL7 312 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 PP6455Q8WZ26 134 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 C9orf16Q9BUW7 83 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 RBFOX1Q9NWB1 397 aaKnown RBP11.96□□□□□ -0.49
CLN3-236ENST00000568558 AASSQ9UDR5 926 aa11.96□□□□□ -0.49
CLN3-236ENST00000568558 TRBV2A0A0J9YWF9 115 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 MGST3O14880 152 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 ENTPD6O75354 484 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 MMP23AO75900 390 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 UBCP0CG48 685 aaKnown RBP11.95□□□□□ -0.5
CLN3-236ENST00000568558 PRKACAP17612 351 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 CD33P20138 364 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 BCL3P20749 454 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms