RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 ZBTB49Q6ZSB9 765 aa15.1■□□□□ 0.01
CLN3-218ENST00000565688 TCF23Q7RTU1 214 aa15.1■□□□□ 0.01
CLN3-218ENST00000565688 TMEM219Q86XT9 240 aa15.1■□□□□ 0.01
CLN3-218ENST00000565688 ZNF676Q8N7Q3 588 aa15.1■□□□□ 0.01
CLN3-218ENST00000565688 OR4S1Q8NGB4 309 aa15.1■□□□□ 0.01
CLN3-218ENST00000565688 EME1Q96AY2 570 aa15.1■□□□□ 0.01
CLN3-218ENST00000565688 CENPNQ96H22 339 aaPredicted RBP15.1■□□□□ 0.01
CLN3-218ENST00000565688 RIBC2Q9H4K1 309 aa15.1■□□□□ 0.01
CLN3-218ENST00000565688 SESN1Q9Y6P5 492 aa15.1■□□□□ 0.01
CLN3-218ENST00000565688 TRBV2A0A0J9YWF9 115 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 MEX3AA1L020 520 aaKnown RBP15.09■□□□□ 0.01
CLN3-218ENST00000565688 F2RL2O00254 374 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 PEX14O75381 377 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 ATP5HO75947 161 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 INMTO95050 263 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 ALDOBP05062 364 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 PRKACBP22694 351 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 MTCP1P56278 107 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 ZNF91Q05481 1191 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 HABP2Q14520 560 aaPredicted RBP15.09■□□□□ 0.01
CLN3-218ENST00000565688 ZNF146Q15072 292 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 SPIN3Q5JUX0 258 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 LDLRAD2Q5SZI1 272 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 SAMD5Q5TGI4 173 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 UTS2BQ765I0 119 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 KCTD20Q7Z5Y7 419 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 FAM58AQ8N1B3 248 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 TRUB1Q8WWH5 349 aaKnown RBP15.09■□□□□ 0.01
CLN3-218ENST00000565688 OAZ3Q9UMX2 235 aa15.09■□□□□ 0.01
CLN3-218ENST00000565688 DSCAML1Q8TD84 2053 aa15.08■□□□□ 0.01
CLN3-218ENST00000565688 IGHV2-26A0A0B4J1V2 119 aa15.08■□□□□ 0
CLN3-218ENST00000565688 MGST3O14880 152 aa15.08■□□□□ 0
CLN3-218ENST00000565688 XPNPEP2O43895 674 aa15.08■□□□□ 0
CLN3-218ENST00000565688 IGHA1P01876 353 aa15.08■□□□□ 0
CLN3-218ENST00000565688 ZNF20P17024 532 aa15.08■□□□□ 0
CLN3-218ENST00000565688 AZGP1P25311 298 aaKnown RBP15.08■□□□□ 0
CLN3-218ENST00000565688 ERP29P30040 261 aaKnown RBP15.08■□□□□ 0
CLN3-218ENST00000565688 KIR3DL2P43630 455 aa15.08■□□□□ 0
CLN3-218ENST00000565688 TP53I3Q53FA7 332 aa15.08■□□□□ 0
CLN3-218ENST00000565688 HIST2H2BDQ6DRA6 164 aa15.08■□□□□ 0
CLN3-218ENST00000565688 LHFPL2Q6ZUX7 228 aa15.08■□□□□ 0
CLN3-218ENST00000565688 REC114Q7Z4M0 266 aa15.08■□□□□ 0
CLN3-218ENST00000565688 NDUFA11Q86Y39 141 aa15.08■□□□□ 0
CLN3-218ENST00000565688 RDH10Q8IZV5 341 aa15.08■□□□□ 0
CLN3-218ENST00000565688 OR52N4Q8NGI2 321 aa15.08■□□□□ 0
CLN3-218ENST00000565688 OR2G2Q8NGZ5 317 aa15.08■□□□□ 0
CLN3-218ENST00000565688 NDNFQ8TB73 568 aa15.08■□□□□ 0
CLN3-218ENST00000565688 ADAT3Q96EY9 351 aaPredicted RBP15.08■□□□□ 0
CLN3-218ENST00000565688 CLEC7AQ9BXN2 247 aa15.08■□□□□ 0
CLN3-218ENST00000565688 CHST6Q9GZX3 395 aa15.08■□□□□ 0
CLN3-218ENST00000565688 TMEM133Q9H2Q1 129 aa15.08■□□□□ 0
CLN3-218ENST00000565688 RBFOX1Q9NWB1 397 aaKnown RBP15.08■□□□□ 0
CLN3-218ENST00000565688 IMPAD1Q9NX62 359 aa15.08■□□□□ 0
CLN3-218ENST00000565688 HILPDAQ9Y5L2 63 aa15.08■□□□□ 0
CLN3-218ENST00000565688 PSPNO60542 156 aa15.07■□□□□ 0
CLN3-218ENST00000565688 ISG15P05161 165 aa15.07■□□□□ 0
CLN3-218ENST00000565688 CD28P10747 220 aa15.07■□□□□ 0
CLN3-218ENST00000565688 BCL3P20749 454 aa15.07■□□□□ 0
CLN3-218ENST00000565688 NPBWR2P48146 333 aa15.07■□□□□ 0
CLN3-218ENST00000565688 POU3F4P49335 361 aa15.07■□□□□ 0
CLN3-218ENST00000565688 ZNF85Q03923 595 aa15.07■□□□□ 0
CLN3-218ENST00000565688 SLC34A1Q06495 639 aa15.07■□□□□ 0
CLN3-218ENST00000565688 IL18R1Q13478 541 aa15.07■□□□□ 0
CLN3-218ENST00000565688 NSUN5P1Q3KNT7 163 aa15.07■□□□□ 0
CLN3-218ENST00000565688 ARSJQ5FYB0 599 aaPredicted RBP15.07■□□□□ 0
CLN3-218ENST00000565688 TRAPPC6BQ86SZ2 158 aa15.07■□□□□ 0
CLN3-218ENST00000565688 OR4F17Q8NGA8 305 aa15.07■□□□□ 0
CLN3-218ENST00000565688 SPSB1Q96BD6 273 aa15.07■□□□□ 0
CLN3-218ENST00000565688 OR4F4Q96R69 305 aa15.07■□□□□ 0
CLN3-218ENST00000565688 WNT10AQ9GZT5 417 aa15.07■□□□□ 0
CLN3-218ENST00000565688 FAM53CQ9NYF3 392 aa15.07■□□□□ 0
CLN3-218ENST00000565688 IL36RNQ9UBH0 155 aa15.07■□□□□ 0
CLN3-218ENST00000565688 UBE2J1Q9Y385 318 aaPredicted RBP15.07■□□□□ 0
CLN3-218ENST00000565688 IGKV1-9A0A0C4DH69 117 aa15.06■□□□□ 0
CLN3-218ENST00000565688 FUOMA2VDF0 154 aa15.06■□□□□ 0
CLN3-218ENST00000565688 SH2D1BO14796 132 aa15.06■□□□□ 0
CLN3-218ENST00000565688 PLXNB1O43157 2135 aa15.06■□□□□ 0
CLN3-218ENST00000565688 ENTPD6O75354 484 aa15.06■□□□□ 0
CLN3-218ENST00000565688 OCM2P0CE71 109 aa15.06■□□□□ 0
CLN3-218ENST00000565688 OCMP0CE72 109 aaPredicted RBP15.06■□□□□ 0
CLN3-218ENST00000565688 PRKACAP17612 351 aa15.06■□□□□ 0
CLN3-218ENST00000565688 ATF1P18846 271 aa15.06■□□□□ 0
CLN3-218ENST00000565688 HTR1DP28221 377 aa15.06■□□□□ 0
CLN3-218ENST00000565688 DUSP1P28562 367 aa15.06■□□□□ 0
CLN3-218ENST00000565688 P2RX3P56373 397 aa15.06■□□□□ 0
CLN3-218ENST00000565688 PDZK1IP1Q13113 114 aa15.06■□□□□ 0
CLN3-218ENST00000565688 FBLN7Q53RD9 439 aa15.06■□□□□ 0
CLN3-218ENST00000565688 OR52W1Q6IF63 320 aa15.06■□□□□ 0
CLN3-218ENST00000565688 FDX2Q6P4F2 183 aa15.06■□□□□ 0
CLN3-218ENST00000565688 TPRX1Q8N7U7 411 aa15.06■□□□□ 0
CLN3-218ENST00000565688 WIPF2Q8TF74 440 aaPredicted RBP15.06■□□□□ 0
CLN3-218ENST00000565688 RNF166Q96A37 237 aaPredicted RBP15.06■□□□□ 0
CLN3-218ENST00000565688 FGGYQ96C11 551 aa15.06■□□□□ 0
CLN3-218ENST00000565688 MBOAT4Q96T53 435 aa15.06■□□□□ 0
CLN3-218ENST00000565688 GAL3ST2Q9H3Q3 398 aa15.06■□□□□ 0
CLN3-218ENST00000565688 HMG20AQ9NP66 347 aa15.06■□□□□ 0
CLN3-218ENST00000565688 FRRS1LQ9P0K9 344 aa15.06■□□□□ 0
CLN3-218ENST00000565688 PCDHGB5Q9Y5G0 923 aa15.06■□□□□ 0
CLN3-218ENST00000565688 DAPL1A0PJW8 107 aa15.05■□□□□ -0
CLN3-218ENST00000565688 FAM90A22PA8MWA6 464 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms