RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 DSCAML1Q8TD84 2053 aa13.9□□□□□ -0.18
VPS9D1-203ENST00000563798 TET2Q6N021 2002 aaPredicted RBP13.9□□□□□ -0.18
VPS9D1-203ENST00000563798 PRKDCP78527 4128 aaKnown RBP13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 SAC3D1A6NKF1 404 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 H3BSH0 61 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 PSPNO60542 156 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 MT-ND2P03891 347 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 OPN1MWP04001 364 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 OPN1MW2P0DN77 364 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 OPN1MW3P0DN78 364 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 ATF1P18846 271 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 PEX2P28328 305 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 NPBWR2P48146 333 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 SPIN3Q5JUX0 258 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 MINOS1Q5TGZ0 78 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 MEDAGQ5VYS4 303 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 FAM58AQ8N1B3 248 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 RPS4Y2Q8TD47 263 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 WIPF2Q8TF74 440 aaPredicted RBP13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 PITPNC1Q9UKF7 332 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 MINOS1-NBL1R4GNA1 71 aa13.89□□□□□ -0.19
VPS9D1-203ENST00000563798 A0A0G2JK05 382 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 MGST3O14880 152 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 SLC16A6O15403 523 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 ENTPD6O75354 484 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 CIB2O75838 187 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 CYB5AP00167 134 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 IGHA1P01876 353 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 AZGP1P25311 298 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 MTCP1P56278 107 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 NANOS3P60323 173 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 PDZK1IP1Q13113 114 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 GRK1Q15835 563 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 SSX2Q16385 188 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 LHFPL2Q6ZUX7 228 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 RNFT2Q96EX2 444 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 RHOFQ9HBH0 211 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 HMG20AQ9NP66 347 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 RBFOX1Q9NWB1 397 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 IMPAD1Q9NX62 359 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 IL36RNQ9UBH0 155 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 EXOGQ9Y2C4 368 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 SESN1Q9Y6P5 492 aa13.88□□□□□ -0.19
VPS9D1-203ENST00000563798 FAM90A22PA8MWA6 464 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 BCL3P20749 454 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 LMO1P25800 156 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 RAB13P51153 203 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 OR12D2P58182 307 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 ACTA2P62736 377 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 ACTG2P63267 376 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 FAM189A2Q15884 450 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 ZBTB49Q6ZSB9 765 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 OR4S1Q8NGB4 309 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 FGGYQ96C11 551 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 WNT10AQ9GZT5 417 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 ABCB10Q9NRK6 738 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 GLS2Q9UI32 602 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 HHLA2Q9UM44 414 aa13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 UBE2J1Q9Y385 318 aaPredicted RBP13.87□□□□□ -0.19
VPS9D1-203ENST00000563798 IGHV2-26A0A0B4J1V2 119 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 DAPL1A0PJW8 107 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 OR4C45A6NMZ5 311 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 H3BNX3 289 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 KDM4BO94953 1096 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 INMTO95050 263 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 ALX3O95076 343 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 GABRR1P24046 479 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 OR3A1P47881 315 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 P2RX3P56373 397 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 EDDM3AQ14507 147 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 KPRPQ5T749 579 aaPredicted RBP13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 SAXO1Q8IYX7 474 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 ACBD7Q8N6N7 88 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 ZNF676Q8N7Q3 588 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 PYDC1Q8WXC3 89 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 CORO2AQ92828 525 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 OPALINQ96PE5 141 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 TMEM133Q9H2Q1 129 aa13.86□□□□□ -0.19
VPS9D1-203ENST00000563798 IGKV1-12A0A0C4DH73 117 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 MEX3AA1L020 520 aaKnown RBP13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 SNTNA6NMZ2 147 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 EI24O14681 340 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 IGKV1D-12P01611 117 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 RPSAP08865 295 aaKnown RBP13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 HTR1AP08908 422 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 ZNF20P17024 532 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 PRKACAP17612 351 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 GABRB1P18505 474 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 POU3F4P49335 361 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 ALDH3A2P51648 485 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 DYNC1I2Q13409 638 aaKnown RBP13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 BEAN1Q3B7T3 259 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 SAMD5Q5TGI4 173 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 TPRX1Q8N7U7 411 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 PELI1Q96FA3 418 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 MYCBPQ99417 103 aaPredicted RBP13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 NKX3-1Q99801 234 aaPredicted RBP13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 CLEC7AQ9BXN2 247 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 PRSS22Q9GZN4 317 aa13.85□□□□□ -0.19
VPS9D1-203ENST00000563798 CHST6Q9GZX3 395 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms