RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 MEIOCA2RUB1 952 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 BTBD17A6NE02 478 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 E9PI62 339 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 SULT1B1O43704 296 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 KDM4BO94953 1096 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 HAND1O96004 215 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 MDKP21741 143 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 ERP29P30040 261 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 NPBWR2P48146 333 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 DLX1P56177 255 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 ADARB1P78563 741 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 ZNF273Q14593 569 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 TAF9Q16594 264 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 PRR31Q5SQ13 230 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 ASCC1Q8N9N2 400 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 OR13C9Q8NGT0 318 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 CPNE2Q96FN4 548 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 AJUBAQ96IF1 538 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 HMG20AQ9NP66 347 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 RBFOX1Q9NWB1 397 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 GLS2Q9UI32 602 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 DIMT1Q9UNQ2 313 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 MGAM2Q2M2H8 2515 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 DSCAML1Q8TD84 2053 aa13.08□□□□□ -0.32
CCDC88C-209ENST00000554872 PKD1L1Q8TDX9 2849 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 TMEM82A0PJX8 343 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 PAHP00439 452 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 ZNF728P0DKX0 622 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 BCL3P20749 454 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 LMO1P25800 156 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 PEX2P28328 305 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 POU3F4P49335 361 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 CDK5R1Q15078 307 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 RCN1Q15293 331 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 SMN1Q16637 294 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 RPL22L1Q6P5R6 122 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 TMPRSS11AQ6ZMR5 421 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 GDPD3Q7L5L3 318 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 BATF2Q8N1L9 274 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 WFDC12Q8WWY7 111 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 PDCD1LG2Q9BQ51 273 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 EXOSC1Q9Y3B2 195 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 LINC00312Q9Y6C7 94 aa13.07□□□□□ -0.32
CCDC88C-209ENST00000554872 IGKV1-12A0A0C4DH73 117 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 hADV38S2A0JD32 116 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 CLPSL1A2RUU4 121 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 FAM90A8PA6NJQ4 464 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 MGST3O14880 152 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 ANGPTL7O43827 346 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 IGKV1D-12P01611 117 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 CSN2P05814 226 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 OCM2P0CE71 109 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 OCMP0CE72 109 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 PIPP12273 146 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 CCL3L1P16619 93 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 BMXP51813 675 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 ZP1P60852 638 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 OGFRL1Q5TC84 451 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 OLFML2AQ68BL7 652 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 TCF23Q7RTU1 214 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 PNKDQ8N490 385 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 DHRSXQ8N5I4 330 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 CHST4Q8NCG5 386 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 OR11H6Q8NGC7 330 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 OR4M1Q8NGD0 313 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 OR52N1Q8NH53 320 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 PPP1R35Q8TAP8 253 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 C16orf95Q9H693 158 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 IL36RNQ9UBH0 155 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 DHDHQ9UQ10 334 aa13.06□□□□□ -0.32
CCDC88C-209ENST00000554872 VGLL3A8MV65 326 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 ODF3BA8MYP8 253 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 OGG1O15527 345 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 SPRY1O43609 319 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 PSPNO60542 156 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 TSPAN9O75954 239 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 PRKACAP17612 351 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 MYL12AP19105 171 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 TGFBR2P37173 567 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 OR3A1P47881 315 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 ETV1P50549 477 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 PRB3Q04118 309 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 KISS1Q15726 138 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 LRRC36Q1X8D7 754 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 ELP2Q6IA86 826 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 ZNF485Q8NCK3 441 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 Q8NFD4 153 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 PXT1Q8NFP0 134 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 CNIH3Q8TBE1 160 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 GPR148Q8TDV2 347 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 FBLIM1Q8WUP2 373 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 RGP1Q92546 391 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 SMIM19Q96E16 107 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 ZNF714Q96N38 554 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 TNFRSF19Q9NS68 423 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 CNOT2Q9NZN8 540 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 TBL2Q9Y4P3 447 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 PCDHGB5Q9Y5G0 923 aa13.05□□□□□ -0.32
CCDC88C-209ENST00000554872 SH2D1BO14796 132 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 CLIC3O95833 236 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms