RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 DEFB136Q30KP8 78 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 TPTE2P1Q5T6R2 138 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 ZFAND6Q6FIF0 208 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 RTN4RL2Q86UN3 420 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 EGFL6Q8IUX8 553 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 OR5M8Q8NGP6 311 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 ZNF596Q8TC21 504 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 CEP19Q96LK0 163 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 NSMCE2Q96MF7 247 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 DGCR6LQ9BY27 220 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 PKIBQ9C010 78 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 CHST6Q9GZX3 395 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 MTCH1Q9NZJ7 389 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 DNAJB9Q9UBS3 223 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 LAMP5Q9UJQ1 280 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 ZNF256Q9Y2P7 627 aaPredicted RBP10.03□□□□□ -0.8
SCAF11-208ENST00000546534 SMAD5-AS1Q9Y6J3 95 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 DNAH1Q9P2D7 4330 aa10.03□□□□□ -0.8
SCAF11-208ENST00000546534 A6NIN4 97 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 SERPINE3A8MV23 424 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 PRR32B1ATL7 298 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 SEC14L6B5MCN3 397 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 PRR23D1E9PI22 279 aaPredicted RBP10.02□□□□□ -0.81
SCAF11-208ENST00000546534 LY6LH3BQJ8 138 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 BUB1B-PAK6H3BSN5 160 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 ARPC2O15144 300 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 PSPNO60542 156 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 TTRP02766 147 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 PRR23D2P0DMB1 279 aaPredicted RBP10.02□□□□□ -0.81
SCAF11-208ENST00000546534 GABRR1P24046 479 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 CDK2P24941 298 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 PEX2P28328 305 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 GDNFP39905 211 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 CEACAM3P40198 252 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 ESRRGP62508 458 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 OR52W1Q6IF63 320 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 MEPCEQ7L2J0 689 aaKnown RBP10.02□□□□□ -0.81
SCAF11-208ENST00000546534 TRAPPC6BQ86SZ2 158 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 COMMD1Q8N668 190 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 TRMT10AQ8TBZ6 339 aaKnown RBP10.02□□□□□ -0.81
SCAF11-208ENST00000546534 SLAMF9Q96A28 289 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 ZNF286AQ9HBT8 521 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 IL36RNQ9UBH0 155 aa10.02□□□□□ -0.81
SCAF11-208ENST00000546534 NUFIP1Q9UHK0 495 aaKnown RBP10.02□□□□□ -0.81
SCAF11-208ENST00000546534 HUWE1Q7Z6Z7 4374 aaKnown RBP10.02□□□□□ -0.81
SCAF11-208ENST00000546534 FAM230AA0A1W2PPH8 454 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 CCDC22O60826 627 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 LY86O95711 162 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 HAND1O96004 215 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 FAM106CPP0CH98 169 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 HSD17B1P14061 328 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 MNDAP41218 407 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 P2RX3P56373 397 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 SLC35B1P78383 322 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 MFGE8Q08431 387 aaPredicted RBP10.01□□□□□ -0.81
SCAF11-208ENST00000546534 MICAQ29983 383 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 HLA-DRB5Q30154 266 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 SLX4IPQ5VYV7 408 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 DEGS2Q6QHC5 323 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 HEPN1Q6WQI6 88 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 C5orf56Q8N8D9 126 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 BBS1Q8NFJ9 593 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 OR8U1Q8NH10 309 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 TEX47Q8TBZ9 253 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 CADM1Q9BY67 442 aaKnown RBP10.01□□□□□ -0.81
SCAF11-208ENST00000546534 DCLRE1BQ9H816 532 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.01□□□□□ -0.81
SCAF11-208ENST00000546534 UBE2J1Q9Y385 318 aaPredicted RBP10.01□□□□□ -0.81
SCAF11-208ENST00000546534 V9GYS6 101 aa10.01□□□□□ -0.81
SCAF11-208ENST00000546534 IGKV1-27A0A075B6S5 117 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 A0A1B0GTI1 187 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 FAM90A18PA6NE21 464 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 FAM90A16PA6NEW6 464 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 FAM90A20PA6NIJ5 464 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 FAM90A9PA6NNJ1 464 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 FAM90A12PA8MX19 464 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 FAM90A5PA8MXJ8 464 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 OOSP1A8MZH6 123 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 MGST3O14880 152 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 PRODHO43272 600 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 FAM90A15PP0C7V4 464 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 FAM90A13PP0C7W8 464 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 FAM90A14PP0C7W9 464 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 FAM90A24PP0C7X0 464 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 DUSP1P28562 367 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 CD34P28906 385 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 ERP29P30040 261 aaKnown RBP10□□□□□ -0.81
SCAF11-208ENST00000546534 RBM39Q14498 530 aaKnown RBP10□□□□□ -0.81
SCAF11-208ENST00000546534 KIR2DS1Q14954 304 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 ZNF260Q3ZCT1 412 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 UTF1Q5T230 341 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 CCDC144NLQ6NUI1 221 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 ADAMTSL5Q6ZMM2 481 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 LCNL1Q6ZST4 164 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 SLC35E3Q7Z769 313 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 THNSL2Q86YJ6 484 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 CPOQ8IVL8 374 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 STPG2Q8N412 459 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 OR14K1Q8NGZ2 314 aa10□□□□□ -0.81
SCAF11-208ENST00000546534 CREB3L1Q96BA8 519 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms