RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 SUCNR1Q9BXA5 334 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CDCA4Q9BXL8 241 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 EBPLQ9BY08 206 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PECRQ9BY49 303 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 YTHDF1Q9BYJ9 559 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC25A39Q9BZJ4 359 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 OCR1Q9BZK8 76 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRIM4Q9C037 500 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 POLR2J2Q9GZM3 115 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLIRPQ9GZT3 109 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PARP12Q9H0J9 701 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PCBD2Q9H0N5 130 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZBP1Q9H171 429 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 POLR2J3Q9H1A7 115 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 LINC00597Q9H2U6 94 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 MS4A6AQ9H2W1 248 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR51I1Q9H343 314 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR51I2Q9H344 312 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TPK1Q9H3S4 243 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 LIME1Q9H400 295 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 FBXL15Q9H469 300 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ASB7Q9H672 318 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RNF167Q9H6Y7 350 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZDHHC11Q9H8X9 412 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 JPT2Q9H910 190 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC25A22Q9H936 323 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GNB4Q9HAV0 340 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 UGT1A8Q9HAW9 530 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PARVBQ9HBI1 364 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SH2D2AQ9NP31 389 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 MYOZ1Q9NP98 299 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 KCNJ16Q9NPI9 418 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SCRT2Q9NQ03 307 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 MIEF1Q9NQG6 463 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RRAGDQ9NQL2 400 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 XPNPEP1Q9NQW7 623 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 BIN3Q9NQY0 253 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF71Q9NQZ8 489 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SPHK2Q9NRA0 654 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 UBQLN4Q9NRR5 601 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 HEBP1Q9NRV9 189 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 INIPQ9NRY2 104 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SPANXA1Q9NS26 97 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RGS18Q9NS28 235 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PARVAQ9NVD7 372 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ARMC1Q9NVT9 282 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 AIG1Q9NVV5 245 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RBM22Q9NW64 420 aaKnown RBP eCLIP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 DMAC2Q9NW81 257 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF446Q9NWS9 450 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GID8Q9NWU2 228 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CMTM6Q9NX76 183 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TAS2R5Q9NYW4 299 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 DOK5Q9P104 306 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 NYAP2Q9P242 653 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PAK5Q9P286 719 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 THAP10Q9P2Z0 257 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 XCL2Q9UBD3 114 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CLCF1Q9UBD9 225 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF629Q9UEG4 869 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRMT112Q9UI30 125 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRO0628Q9UI54 55 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 VAX2Q9UIW0 290 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 KLHL21Q9UJP4 597 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF223Q9UK11 482 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 FBXO5Q9UKT4 447 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PAIP2BQ9ULR5 123 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 NDRG2Q9UN36 371 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ANGPT4Q9Y264 503 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ST3GAL6Q9Y274 331 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ERGIC3Q9Y282 383 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRAPPC4Q9Y296 219 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF256Q9Y2P7 627 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF257Q9Y2Q1 563 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 POLR1DQ9Y2S0 133 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CARHSP1Q9Y2V2 147 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SIGLEC9Q9Y336 463 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 NDUFAF1Q9Y375 327 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 UGT2A1Q9Y4X1 527 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 HES2Q9Y543 173 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 HSPB11Q9Y547 144 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC25A15Q9Y619 301 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC22A7Q9Y694 548 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 WSB1Q9Y6I7 421 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ENPP4Q9Y6X5 453 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCDC144AA2RUR9 1427 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 NOS1P29475 1434 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PTPRKQ15262 1439 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SSH2Q76I76 1423 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 POGZQ7Z3K3 1410 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RTL1A6NKG5 1358 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ARHGEF10O15013 1369 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 NID2Q14112 1375 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PALLDQ8WX93 1383 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TONSLQ96HA7 1378 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 KIAA1210Q9ULL0 1709 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 WDR62O43379 1518 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM135AQ9P2D6 1515 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 CLUHO75153 1309 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 PCDH11XQ9BZA7 1347 aa0.44□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms