RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 POM121L2Q96KW2 1035 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 GPR78Q96P69 363 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 OR7D2Q96RA2 312 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 CD180Q99467 661 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 MGLLQ99685 303 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 NRTNQ99748 197 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 WDR83Q9BRX9 315 aaKnown RBP4.73□□□□□ -1.65
NUP54-218ENST00000515460 ZNF670Q9BS34 389 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 NUDT9Q9BW91 350 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 GATA5Q9BWX5 397 aaPredicted RBP4.73□□□□□ -1.65
NUP54-218ENST00000515460 PLA2G12AQ9BZM1 189 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 SLC25A51Q9H1U9 297 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 CST9LQ9H4G1 147 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 WDR55Q9H6Y2 383 aaPredicted RBP4.73□□□□□ -1.65
NUP54-218ENST00000515460 HRASLSQ9HDD0 168 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 Q9N2J8 555 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 BPIFA1Q9NP55 256 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 MMP25Q9NPA2 562 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 FGF21Q9NSA1 209 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 CBLN4Q9NTU7 201 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 ASF1BQ9NVP2 202 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 RARRES3Q9UL19 164 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 EXO1Q9UQ84 846 aaKnown RBP4.73□□□□□ -1.65
NUP54-218ENST00000515460 ST3GAL6Q9Y274 331 aa4.73□□□□□ -1.65
NUP54-218ENST00000515460 AKAP6Q13023 2319 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 A0A087WZY1 265 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 A0A0A6YYC8 382 aaPredicted RBP4.72□□□□□ -1.65
NUP54-218ENST00000515460 LOC285095A0A1B0GVY8 99 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 H3BN98 237 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 I3L1I5 382 aaPredicted RBP4.72□□□□□ -1.65
NUP54-218ENST00000515460 APOC4-APOC2K7ER74 178 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 GAPDHSO14556 408 aaPredicted RBP4.72□□□□□ -1.65
NUP54-218ENST00000515460 GOSR2O14653 212 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 MPZL2O60487 215 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 ZG16O60844 167 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 SCRG1O75711 98 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 SYNGR4O95473 234 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 MT-CO2P00403 227 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 MT-ATP6P00846 226 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 CST1P01037 141 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 TGFAP01135 160 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 THY1P04216 161 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 ARG1P05089 322 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 RAB40ALP0C0E4 278 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 CD79AP11912 226 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 GSTM3P21266 225 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 NFYBP25208 207 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 SHC1P29353 583 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 BTCP35070 178 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 RBM34P42696 430 aaKnown RBP4.72□□□□□ -1.65
NUP54-218ENST00000515460 ZNF140P52738 457 aaPredicted RBP4.72□□□□□ -1.65
NUP54-218ENST00000515460 CDH12P55289 794 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 RAB11AP62491 216 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 RHOGP84095 191 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 PLPPR5Q32ZL2 321 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 ZNF789Q5FWF6 425 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 ELFN2Q5R3F8 820 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 ADAM5Q6NVV9 412 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 ZNF549Q6P9A3 640 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 TMEM220Q6QAJ8 160 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 SMARCD3Q6STE5 483 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 ZNF562Q6V9R5 426 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 OR2W3Q7Z3T1 314 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 KCNRGQ8N5I3 272 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 OR2C3Q8N628 320 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 OR4K14Q8NGD5 310 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 OR8J1Q8NGP2 316 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 OR1S2Q8NGQ3 325 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 OR1L6Q8NGR2 347 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 OR1J2Q8NGS2 313 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 OR13C4Q8NGS5 318 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 OR13C9Q8NGT0 318 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 OR51F2Q8NH61 342 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 PINX1Q96BK5 328 aaKnown RBP4.72□□□□□ -1.65
NUP54-218ENST00000515460 ANKRD9Q96BM1 317 aaPredicted RBP4.72□□□□□ -1.65
NUP54-218ENST00000515460 LRRC58Q96CX6 371 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 SNRNP40Q96DI7 357 aaKnown RBP4.72□□□□□ -1.65
NUP54-218ENST00000515460 JSRP1Q96MG2 331 aaPredicted RBP4.72□□□□□ -1.65
NUP54-218ENST00000515460 KCTD7Q96MP8 289 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 COPS8Q99627 209 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 HIST1H2BLQ99880 126 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 CITED1Q99966 193 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 MIEN1Q9BRT3 115 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 NICN1Q9BSH3 213 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 ADAT1Q9BUB4 502 aaKnown RBP4.72□□□□□ -1.65
NUP54-218ENST00000515460 HINT2Q9BX68 163 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 MS4A8Q9BY19 250 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 GABARAPL3Q9BY60 117 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 SLC25A31Q9H0C2 315 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 SRMSQ9H3Y6 488 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 MEAF6Q9HAF1 191 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 TMEM27Q9HBJ8 222 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 WFDC1Q9HC57 220 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 RPS10P5Q9NQ39 176 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 SPANXA1Q9NS26 97 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 TMEM100Q9NV29 134 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 PLEKHJ1Q9NW61 149 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 HRASLS2Q9NWW9 162 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 NDUFB11Q9NX14 153 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 PIPOXQ9P0Z9 390 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms