RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CNIH1O95406 144 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 CFDP00746 253 aaPredicted RBP11.18□□□□□ -0.62
USP53-209ENST00000514665 TTRP02766 147 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 OR5G3P0C626 314 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 DEFA4P12838 97 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 CEACAM6P40199 344 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 DVL1P1P54792 670 aaPredicted RBP11.18□□□□□ -0.62
USP53-209ENST00000514665 EDARADDQ8WWZ3 215 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 MRPL24Q96A35 216 aaKnown RBP11.18□□□□□ -0.62
USP53-209ENST00000514665 ZNF385AQ96PM9 386 aaKnown RBP11.18□□□□□ -0.62
USP53-209ENST00000514665 EGLN1Q9GZT9 426 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 AMDHD2Q9Y303 409 aa11.18□□□□□ -0.62
USP53-209ENST00000514665 TRAV39A0A0B4J263 110 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 SEMA7AO75326 666 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 LYZL6O75951 148 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 PGA3P0DJD8 388 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 CXCL2P19875 107 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 FGF7P21781 194 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 MPLP40238 635 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 CISD2Q8N5K1 135 aaKnown RBP11.17□□□□□ -0.62
USP53-209ENST00000514665 SMRP1Q8NCR6 262 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 OIT3Q8WWZ8 545 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 ISOC2Q96AB3 205 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 HDHD3Q9BSH5 251 aaPredicted RBP11.17□□□□□ -0.62
USP53-209ENST00000514665 COMMD5Q9GZQ3 224 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 UQCC1Q9NVA1 299 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 A0A1W2PPC1 479 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 PATE3B3GLJ2 98 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 M0R1X1 148 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 ABCD4O14678 606 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 S100A8P05109 93 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 OR10J4P0C629 311 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 LSM6P62312 80 aaKnown RBP11.17□□□□□ -0.62
USP53-209ENST00000514665 C3AR1Q16581 482 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 SMIM21Q3B7S5 101 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 ACOT6Q3I5F7 207 aaPredicted RBP11.17□□□□□ -0.62
USP53-209ENST00000514665 CMTM2Q8TAZ6 248 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 DYRK2Q92630 601 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 SLC35E1Q96K37 410 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 CIB3Q96Q77 187 aaPredicted RBP11.17□□□□□ -0.62
USP53-209ENST00000514665 SDHCQ99643 169 aaPredicted RBP11.17□□□□□ -0.62
USP53-209ENST00000514665 CFHR5Q9BXR6 569 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 ZNF391Q9UJN7 358 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 ELF5Q9UKW6 265 aaPredicted RBP11.17□□□□□ -0.62
USP53-209ENST00000514665 ATP23Q9Y6H3 246 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 R4GN57 208 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 CREBBPQ92793 2442 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 CCDC187A0A096LP49 1063 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 LINC00862A6NCI5 91 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 CDRT15L2A8MXV6 281 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 SIGLEC5O15389 551 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 SPRY3O43610 288 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 CALCRP30988 508 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 SIGLEC14Q08ET2 396 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 ABHD3Q8WU67 409 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 KISS1RQ969F8 398 aaPredicted RBP11.17□□□□□ -0.62
USP53-209ENST00000514665 TECTBQ96PL2 329 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 OR51I2Q9H344 312 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 TMEM9BQ9NQ34 198 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 KCNK7Q9Y2U2 307 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 ZNF891A8MT65 544 aaPredicted RBP11.17□□□□□ -0.62
USP53-209ENST00000514665 PHOX2AO14813 284 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 ARG1P05089 322 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 NTF3P20783 257 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 FAHD2BQ6P2I3 314 aaPredicted RBP11.17□□□□□ -0.62
USP53-209ENST00000514665 OR11H4Q8NGC9 324 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 FAHD2AQ96GK7 314 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 GPR27Q9NS67 375 aa11.17□□□□□ -0.62
USP53-209ENST00000514665 PCNTO95613 3336 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 PRRG2O14669 202 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 B3GALNT1O75752 331 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 CT45A6P0DMU7 189 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 CT45A5P0DMU8 189 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 CT45A7P0DMV0 189 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 GSK3AP49840 483 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 TRA2AQ13595 282 aaKnown RBP eCLIP11.16□□□□□ -0.62
USP53-209ENST00000514665 TIGITQ495A1 244 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 CT45A1Q5HYN5 189 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 PLAC9Q5JTB6 97 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 OR2Z1Q8NG97 314 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 CT45A3Q8NHU0 189 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 LURAP1Q96LR2 239 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 CYB5R1Q9UHQ9 305 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 TMEM30CPA0ZSE6 113 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 GALR2O43603 387 aaPredicted RBP11.16□□□□□ -0.62
USP53-209ENST00000514665 LMX1BO60663 402 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 CYTIPO60759 359 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 CTSDP07339 412 aaPredicted RBP11.16□□□□□ -0.62
USP53-209ENST00000514665 BMP5P22003 454 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 FCARP24071 287 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 GGTLC2Q14390 218 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 MOGAT2Q3SYC2 334 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 Q5BKY6 102 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 SPINK9Q5DT21 86 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 SLC35B3Q9H1N7 401 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 HIF1ANQ9NWT6 349 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 VSIG4Q9Y279 399 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 OTOFQ9HC10 1997 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 IGHV3-43A0A0B4J1X8 118 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 DVL1O14640 695 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms