RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 LINC00574Q9H8X3 128 aa4.29□□□□□ -1.72
NUP54-215ENST00000514313 DIABLOQ9NR28 239 aa4.29□□□□□ -1.72
NUP54-215ENST00000514313 RWDD2AQ9UIY3 292 aa4.29□□□□□ -1.72
NUP54-215ENST00000514313 CEACAM18A8MTB9 384 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 KRTAP9-6A8MVA2 160 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 SMLR1H3BR10 107 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 SNRPAP09012 282 aaKnown RBP4.28□□□□□ -1.72
NUP54-215ENST00000514313 RD3LP0DJH9 198 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 KDELR2P33947 212 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 HTR2BP41595 481 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 RAB31Q13636 194 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 ATP6AP1LQ52LC2 224 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 MED27Q6P2C8 311 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 PRSS54Q6PEW0 395 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 MIR7-3HGQ8N6C7 128 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 ST20-AS1Q8NBB2 130 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 ZNF555Q8NEP9 628 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 PHF10Q8WUB8 498 aaKnown RBP4.28□□□□□ -1.72
NUP54-215ENST00000514313 CCDC12Q8WUD4 166 aaPredicted RBP4.28□□□□□ -1.72
NUP54-215ENST00000514313 LINC00477Q96M19 166 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 API5Q9BZZ5 524 aaKnown RBP4.28□□□□□ -1.72
NUP54-215ENST00000514313 LHX5Q9H2C1 402 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 SCML1Q9UN30 329 aa4.28□□□□□ -1.72
NUP54-215ENST00000514313 SETD1AO15047 1707 aaKnown RBP4.28□□□□□ -1.72
NUP54-215ENST00000514313 USP42Q9H9J4 1324 aaKnown RBP4.27□□□□□ -1.73
NUP54-215ENST00000514313 IGLV3-12A0A075B6K2 115 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 CLDN34H7C241 214 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 LGALS9O00182 355 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 FFAR1O14842 300 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 UBDO15205 165 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 FABP7O15540 132 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 CALUO43852 315 aaPredicted RBP4.27□□□□□ -1.73
NUP54-215ENST00000514313 MYO1DO94832 1006 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 TSPOP30536 169 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 CCL23P55773 120 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 ELOCQ15369 112 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 SSX1Q16384 188 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 GALNT10Q86SR1 603 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 BOD1L2Q8IYS8 172 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 ZDHHC22Q8N966 263 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 CCDC127Q96BQ5 260 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 MFSD1Q9H3U5 465 aa4.27□□□□□ -1.73
NUP54-215ENST00000514313 STX18Q9P2W9 335 aaKnown RBP4.27□□□□□ -1.73
NUP54-215ENST00000514313 ABCB11O95342 1321 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 TRAV40A0A0B4J280 105 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 K7EM74 188 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 GYG2O15488 501 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 SNAP29O95721 258 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 MPIP34949 423 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 LINC00596Q86U02 117 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 ZNF615Q8N8J6 731 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 SLC26A10Q8NG04 563 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 OR5H2Q8NGV7 314 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 ACTL9Q8TC94 416 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 RNASEH2CQ8TDP1 164 aaKnown RBP4.26□□□□□ -1.73
NUP54-215ENST00000514313 CYTL1Q9NRR1 136 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 ZNHIT6Q9NWK9 470 aaKnown RBP4.26□□□□□ -1.73
NUP54-215ENST00000514313 TAS2R13Q9NYV9 303 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 SLC22A14Q9Y267 594 aa4.26□□□□□ -1.73
NUP54-215ENST00000514313 NRCAMQ92823 1304 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 C9JQL5 133 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 H3BP45 60 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 RPL36A-HNRNPH2H7BZ11 118 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 YEATS4O95619 227 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 PRB2P02812 416 aaPredicted RBP4.25□□□□□ -1.73
NUP54-215ENST00000514313 FUT5Q11128 374 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 BNIP2Q12982 314 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 TRMT10CQ7L0Y3 403 aaKnown RBP4.25□□□□□ -1.73
NUP54-215ENST00000514313 LRRC45Q96CN5 670 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 PITX2Q99697 317 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 APOL4Q9BPW4 351 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 ANGPTL4Q9BY76 406 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 SRRQ9GZT4 340 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 SLC25A31Q9H0C2 315 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 DSN1Q9H410 356 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 EURLQ9NYK6 297 aa4.25□□□□□ -1.73
NUP54-215ENST00000514313 ZNF706Q9Y5V0 76 aaPredicted RBP4.25□□□□□ -1.73
NUP54-215ENST00000514313 LRPPRCP42704 1394 aaKnown RBP4.25□□□□□ -1.73
NUP54-215ENST00000514313 A8MUU9 505 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 PRAMEF26H0Y7S4 382 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 TOR1AO14656 332 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 SLC37A4O43826 429 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 CDRT1O95170 752 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 CECR9P0C854 216 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 HBG1P69891 147 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 HBG2P69892 147 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 PRDX1Q06830 199 aaKnown RBP4.24□□□□□ -1.73
NUP54-215ENST00000514313 EIF4EBP2Q13542 120 aaPredicted RBP4.24□□□□□ -1.73
NUP54-215ENST00000514313 UBE2NLQ5JXB2 153 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 RBM48Q5RL73 367 aaKnown RBP4.24□□□□□ -1.73
NUP54-215ENST00000514313 USP50Q70EL3 339 aaPredicted RBP4.24□□□□□ -1.73
NUP54-215ENST00000514313 FA2HQ7L5A8 372 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 SSX7Q7RTT5 188 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 IQCF2Q8IXL9 164 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 OR7G1Q8NGA0 311 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 OR6K3Q8NGY3 331 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 FAM45AQ8TCE6 357 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 MRAP2Q96G30 205 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 PGLYRP3Q96LB9 341 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 SUCNR1Q9BXA5 334 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms