RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 UGT2A3Q6UWM9 527 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 CLEC18BQ6UXF7 455 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 TMPPEQ6ZT21 453 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 LINC00596Q86U02 117 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 COMTD1Q86VU5 262 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 CA13Q8N1Q1 262 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 RPRMLQ8N4K4 120 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 C22orf15Q8WYQ4 148 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 TNFRSF14Q92956 283 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 FAM131CQ96AQ9 280 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 QKIQ96PU8 341 aaKnown RBP eCLIP1.45□□□□□ -2.18
VPS50-219ENST00000495039 ASB7Q9H672 318 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 C12orf4Q9NQ89 552 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 SDHAF3Q9NRP4 125 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 ANXA10Q9UJ72 324 aa1.45□□□□□ -2.18
VPS50-219ENST00000495039 TRAV8-7A0A075B6U6 113 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 A0A0B4J2C4 111 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 ZNF729A6NN14 1252 aaPredicted RBP1.44□□□□□ -2.18
VPS50-219ENST00000495039 OR2AT4A6NND4 320 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 GGTLC3B5MD39 225 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 UPK2O00526 184 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 ISLRO14498 428 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 PLXNB1O43157 2135 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 PSCAO43653 123 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 PSIP1O75475 530 aaKnown RBP1.44□□□□□ -2.18
VPS50-219ENST00000495039 RLN2P04090 185 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 LIPCP11150 499 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 ZNF708P17019 499 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 P2RY2P41231 377 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 TAL2Q16559 108 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 NDUFAF6Q330K2 333 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 KRTAP13-4Q3LI77 160 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 ZNF404Q494X3 552 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 UBE2NLQ5JXB2 153 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 ZNF773Q6PK81 442 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 Q6ZQT7 251 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 C3orf22Q8N5N4 141 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 BPIFB6Q8NFQ5 453 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 YPEL4Q96NS1 127 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 CHID1Q9BWS9 393 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 RHOFQ9HBH0 211 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 NLE1Q9NVX2 485 aaPredicted RBP1.44□□□□□ -2.18
VPS50-219ENST00000495039 DDIT4Q9NX09 232 aa1.44□□□□□ -2.18
VPS50-219ENST00000495039 ZNF706Q9Y5V0 76 aaPredicted RBP1.44□□□□□ -2.18
VPS50-219ENST00000495039 KIF27Q86VH2 1401 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 IGHV3-21A0A0B4J1V1 117 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 SLC5A10A0PJK1 596 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 MYBPHLA2RUH7 354 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 ZNF593O00488 134 aaPredicted RBP1.43□□□□□ -2.18
VPS50-219ENST00000495039 GMDSO60547 372 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 SNAI1O95863 264 aaPredicted RBP1.43□□□□□ -2.18
VPS50-219ENST00000495039 GPR4P46093 362 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 DYNC1I2Q13409 638 aaKnown RBP1.43□□□□□ -2.18
VPS50-219ENST00000495039 GPR176Q14439 515 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 STK38Q15208 465 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 CLEC12AQ5QGZ9 265 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 ASCL4Q6XD76 172 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 ZFP82Q8N141 532 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 ZNF321PQ8N8H1 164 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 C2orf15Q8WU43 125 aaKnown RBP1.43□□□□□ -2.18
VPS50-219ENST00000495039 OR5P3Q8WZ94 311 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 TOP1MTQ969P6 601 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 SLC25A44Q96H78 314 aaPredicted RBP1.43□□□□□ -2.18
VPS50-219ENST00000495039 STACQ99469 402 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 SHCBP1LQ9BZQ2 653 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 TXNIPQ9H3M7 391 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 GAL3ST2Q9H3Q3 398 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 TDRD3Q9H7E2 651 aaKnown RBP1.43□□□□□ -2.18
VPS50-219ENST00000495039 V9GYY9 64 aa1.43□□□□□ -2.18
VPS50-219ENST00000495039 NOS1P29475 1434 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 PCNX2A6NKB5 2137 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 MYO16Q9Y6X6 1858 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 IGHV3-43A0A0B4J1X8 118 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 SDHAF1A6NFY7 115 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 TVP23AA6NH52 213 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 CD300LBA8K4G0 201 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 C3orf84H3BNL1 204 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 DEDDO75618 318 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 IGKV1D-33P01593 117 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 IGKV1-33P01594 117 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 STAG3L2P0CL84 134 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 SCGB1C2P0DMR2 95 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 HTR2CP28335 458 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 CCL23P55773 120 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 BNIP2Q12982 314 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 TPBGQ13641 420 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 TMEM241Q24JQ0 296 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 TCF24Q7RTU0 167 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 ATPAF2Q8N5M1 289 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 OR2K2Q8NGT1 345 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 OR6K3Q8NGY3 331 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 OR6N2Q8NGY6 317 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 SCGB1C1Q8TD33 95 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 APOBEC3DQ96AK3 386 aaPredicted RBP1.42□□□□□ -2.18
VPS50-219ENST00000495039 TRIB3Q96RU7 358 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 VAT1Q99536 393 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 UTP23Q9BRU9 249 aaKnown RBP1.42□□□□□ -2.18
VPS50-219ENST00000495039 HIGD2AQ9BW72 106 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 BEX2Q9BXY8 128 aa1.42□□□□□ -2.18
VPS50-219ENST00000495039 GABARAPL1Q9H0R8 117 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms