RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	NDUFB8	O95169	186 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	NCK1	P16333	377 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	OMG	P23515	440 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	GATA4	P43694	442 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	PPIC	P45877	212 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	FBXW4	P57775	412 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	PJVK	Q0ZLH3	352 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	ARHGAP11B	Q3KRB8	267 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	GCSAML	Q5JQS6	135 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	DCAF12L2	Q5VW00	463 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	MBOAT2	Q6ZWT7	520 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	CISD2	Q8N5K1	135 aa	Known RBP	10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	RELL2	Q8NC24	303 aa	Predicted RBP	10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	FAM110B	Q8TC76	370 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	GPR146	Q96CH1	333 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	SLC2A8	Q9NY64	477 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	CCDC167	Q9P0B6	97 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	ERRFI1	Q9UJM3	462 aa	Predicted RBP	10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	IKZF2	Q9UKS7	526 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	OSGIN2	Q9Y236	505 aa		10.14	□□□□□ -0.79
BRCA1-222	ENST00000493919	TRAV8-7	A0A075B6U6	113 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	hCG_38984	A0A1B0GV85	526 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	TUSC2	O75896	110 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	TOX4	O94842	621 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	GLS	O94925	669 aa	Predicted RBP	10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	SP1	P08047	785 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	CT45A8	P0DMV1	189 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	CT45A9	P0DMV2	189 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	RAP2A	P10114	183 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	FPR2	P25090	351 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	SELENOP	P49908	381 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	POLR2J	P52435	117 aa	Known RBP	10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	CDH12	P55289	794 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	MAD2L1BP	Q15013	274 aa	Predicted RBP	10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	SGCB	Q16585	318 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	CT45A2	Q5DJT8	189 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	TPTE2P1	Q5T6R2	138 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	FAM180A	Q6UWF9	173 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	LGI3	Q8N145	548 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	GBGT1	Q8N5D6	347 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	KCTD12	Q96CX2	325 aa	Known RBP	10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	PIPOX	Q9P0Z9	390 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	JPT1	Q9UK76	154 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	FOXJ3	Q9UPW0	622 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	RBFOX2	O43251	390 aa	Known RBP eCLIP	10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	HIST1H2BK	O60814	126 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	CNIH1	O95406	144 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	F12	P00748	615 aa	Predicted RBP	10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	HMGN2	P05204	90 aa	Known RBP	10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	HIST1H2BJ	P06899	126 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	FBXO45	P0C2W1	286 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	CCL3	P10147	92 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	TNFRSF1A	P19438	455 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	NME2	P22392	152 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	HIST1H2BO	P23527	126 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	HIST1H2BB	P33778	126 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	ATP4B	P51164	291 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	HIST1H2BD	P58876	126 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	HIST1H2BC	P62807	126 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	TLE1	Q04724	770 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	EGR4	Q05215	589 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	NTRK2	Q16620	822 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	PRSS8	Q16651	343 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	HIST2H2BE	Q16778	126 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	MFSD12	Q6NUT3	480 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	TMEM183A	Q8IXX5	376 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	OR4N2	Q8NGD1	307 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	HIST1H2BH	Q93079	126 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	PTH2	Q96A98	100 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	YPEL4	Q96NS1	127 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	HIST1H2BN	Q99877	126 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	HIST1H2BM	Q99879	126 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	RNF167	Q9H6Y7	350 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	MRPL27	Q9P0M9	148 aa	Known RBP	10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	CACFD1	Q9UGQ2	172 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	FLVCR2	Q9UPI3	526 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	KLF13	Q9Y2Y9	288 aa	Predicted RBP	10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	TSSC4	Q9Y5U2	329 aa	Predicted RBP	10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	EXPH5	Q8NEV8	1989 aa		10.13	□□□□□ -0.79
BRCA1-222	ENST00000493919	NUP214	P35658	2090 aa	Predicted RBP	10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919		A0A0G2JMM0	328 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919		A0A1W2PPB8	328 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919		A0A1W2PRS3	328 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	KIR3DP1	A8MWS1	328 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	RFXANK	O14593	260 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	REM1	O75628	298 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919		P04436	131 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	RLN1	P04808	185 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	IFI6	P09912	130 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	OR5G3	P0C626	314 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	AGTR1	P30556	359 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	GABRA3	P34903	492 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	CHI3L1	P36222	383 aa	Predicted RBP	10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	RPS10	P46783	165 aa	Known RBP	10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	MEOX1	P50221	254 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	RPL32	P62910	135 aa	Known RBP	10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	ZNF791	Q3KP31	576 aa	Predicted RBP	10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	SLC36A2	Q495M3	483 aa		10.12	□□□□□ -0.79
BRCA1-222	ENST00000493919	PRSS54	Q6PEW0	395 aa		10.12	□□□□□ -0.79

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