RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 PALMDQ9NP74 551 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 NDE1Q9NXR1 346 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 MTCH1Q9NZJ7 389 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 NUFIP1Q9UHK0 495 aaKnown RBP13.57□□□□□ -0.24
VIM-204ENST00000478746 MOB4Q9Y3A3 225 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 HSPE1-MOB4S4R3N1 261 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 U3KQV3 271 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 DNAH1Q9P2D7 4330 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 FAM230AA0A1W2PPH8 454 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 A6NIN4 97 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 B2RBV5 119 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 PRODHO43272 600 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 INMTO95050 263 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 IGLV1-47P01700 117 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 IGHA1P01876 353 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 FAM106CPP0CH98 169 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 MNDAP41218 407 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 RPS7P62081 194 aaKnown RBP13.56□□□□□ -0.24
VIM-204ENST00000478746 SLC35B1P78383 322 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 GABPB1Q06547 395 aaPredicted RBP13.56□□□□□ -0.24
VIM-204ENST00000478746 ZNF829Q3KNS6 432 aaPredicted RBP13.56□□□□□ -0.24
VIM-204ENST00000478746 SPATS1Q496A3 300 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 KIAA2026Q5HYC2 2103 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 PRAMEF5Q5TYX0 476 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 C16orf89Q6UX73 402 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 CD300LDQ6UXZ3 194 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 EGFL6Q8IUX8 553 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 TRMT10AQ8TBZ6 339 aaKnown RBP13.56□□□□□ -0.24
VIM-204ENST00000478746 CREB3L1Q96BA8 519 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 RAX2Q96IS3 184 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 NIPSNAP1Q9BPW8 284 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 YIPF3Q9GZM5 350 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 REEP1Q9H902 201 aa13.56□□□□□ -0.24
VIM-204ENST00000478746 UBE2J1Q9Y385 318 aaPredicted RBP13.56□□□□□ -0.24
VIM-204ENST00000478746 SAMHD1Q9Y3Z3 626 aaKnown RBP13.56□□□□□ -0.24
VIM-204ENST00000478746 SERPINE3A8MV23 424 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 EBAG9O00559 213 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 TOR1AO14656 332 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 ZNF254O75437 659 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 HAND1O96004 215 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 TTRP02766 147 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 T-ENOLP0DO92 83 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 CDK2P24941 298 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 SLC35D3Q5M8T2 416 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 TPTE2P1Q5T6R2 138 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 OR2T5Q6IEZ7 315 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 CCDC144NLQ6NUI1 221 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 CPOQ8IVL8 374 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 ZNF679Q8IYX0 411 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 COMMD1Q8N668 190 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 OR5M8Q8NGP6 311 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 OR2T29Q8NH02 315 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 SLAMF9Q96A28 289 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 RCHY1Q96PM5 261 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 ACTR3BQ9P1U1 418 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 GLS2Q9UI32 602 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 LINC00527Q9UJ94 153 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 GTF2A1LQ9UNN4 478 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 SLC7A11Q9UPY5 501 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 V9GYS6 101 aa13.55□□□□□ -0.24
VIM-204ENST00000478746 FAM172BPA6NC97 362 aa13.54□□□□□ -0.24
VIM-204ENST00000478746 BUB1B-PAK6H3BSN5 160 aa13.54□□□□□ -0.24
VIM-204ENST00000478746 MGST3O14880 152 aa13.54□□□□□ -0.24
VIM-204ENST00000478746 ATP6V1B2P21281 511 aa13.54□□□□□ -0.24
VIM-204ENST00000478746 RIDAP52758 137 aaKnown RBP13.54□□□□□ -0.24
VIM-204ENST00000478746 PRRX1P54821 245 aa13.54□□□□□ -0.24
VIM-204ENST00000478746 HEPN1Q6WQI6 88 aa13.54□□□□□ -0.24
VIM-204ENST00000478746 THNSL2Q86YJ6 484 aa13.54□□□□□ -0.24
VIM-204ENST00000478746 DEFB107AQ8IZN7 70 aa13.54□□□□□ -0.24
VIM-204ENST00000478746 OR10G2Q8NGC3 310 aa13.54□□□□□ -0.24
VIM-204ENST00000478746 OR14K1Q8NGZ2 314 aa13.54□□□□□ -0.24
VIM-204ENST00000478746 CADM1Q9BY67 442 aaKnown RBP13.54□□□□□ -0.24
VIM-204ENST00000478746 GAL3ST2Q9H3Q3 398 aa13.54□□□□□ -0.24
VIM-204ENST00000478746 SEBOXQ9HB31 216 aaPredicted RBP13.54□□□□□ -0.24
VIM-204ENST00000478746 SCOCQ9UIL1 159 aa13.54□□□□□ -0.24
VIM-204ENST00000478746 OOSP1A8MZH6 123 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 LY6LH3BQJ8 138 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 PSPNO60542 156 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 HMGN1P05114 100 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 ERP29P30040 261 aaKnown RBP13.53□□□□□ -0.24
VIM-204ENST00000478746 ROM1Q03395 351 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 MFGE8Q08431 387 aaPredicted RBP13.53□□□□□ -0.24
VIM-204ENST00000478746 BNIP1Q12981 228 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 GINS1Q14691 196 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 KPNB1Q14974 876 aaKnown RBP13.53□□□□□ -0.24
VIM-204ENST00000478746 HLA-DRB5Q30154 266 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 ENTHD1Q8IYW4 607 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 BBS1Q8NFJ9 593 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 EMG1Q92979 244 aaKnown RBP13.53□□□□□ -0.24
VIM-204ENST00000478746 MAGIXQ9H6Y5 334 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 ZNF286AQ9HBT8 521 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 IKZF2Q9UKS7 526 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 SMAD5-AS1Q9Y6J3 95 aa13.53□□□□□ -0.24
VIM-204ENST00000478746 TRGV10A0A0A0MS01 117 aa13.52□□□□□ -0.25
VIM-204ENST00000478746 A0A1B0GTI1 187 aa13.52□□□□□ -0.25
VIM-204ENST00000478746 FAM90A18PA6NE21 464 aa13.52□□□□□ -0.25
VIM-204ENST00000478746 FAM90A16PA6NEW6 464 aa13.52□□□□□ -0.25
VIM-204ENST00000478746 FAM90A20PA6NIJ5 464 aa13.52□□□□□ -0.25
VIM-204ENST00000478746 FAM90A9PA6NNJ1 464 aa13.52□□□□□ -0.25
VIM-204ENST00000478746 FAM90A12PA8MX19 464 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms