RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 ZNF714Q96N38 554 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 EXOGQ9Y2C4 368 aaKnown RBP13.19□□□□□ -0.3
COL9A3-208ENST00000469802 SIGLEC9Q9Y336 463 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 ORC6Q9Y5N6 252 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 KIAA2026Q5HYC2 2103 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 DAPL1A0PJW8 107 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 MEX3AA1L020 520 aaKnown RBP13.18□□□□□ -0.3
COL9A3-208ENST00000469802 OR4C45A6NMZ5 311 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 PSPNO60542 156 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 INMTO95050 263 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 BCL3P20749 454 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 PRKACBP22694 351 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 C2orf68Q2NKX9 166 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 SPIN3Q5JUX0 258 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 LHFPL2Q6ZUX7 228 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 FAM58AQ8N1B3 248 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 ACBD7Q8N6N7 88 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 OR51A4Q8NGJ6 313 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 OR13D1Q8NGV5 346 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 CFHR4Q92496 578 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 OPALINQ96PE5 141 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 CDCA4Q9BXL8 241 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 NPFFR1Q9GZQ6 430 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 HHLA2Q9UM44 414 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 TCF19Q9Y242 345 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 LINC00312Q9Y6C7 94 aa13.18□□□□□ -0.3
COL9A3-208ENST00000469802 hADV38S2A0JD32 116 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 PLXNB1O43157 2135 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 MT-ND2P03891 347 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 ARG1P05089 322 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 HTR1AP08908 422 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 POU3F4P49335 361 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 MTCP1P56278 107 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 ACTA2P62736 377 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 ACTG2P63267 376 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 EDDM3AQ14507 147 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 HERPUD1Q15011 391 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 ZIK1Q3SY52 487 aaPredicted RBP13.17□□□□□ -0.3
COL9A3-208ENST00000469802 CBR4Q8N4T8 237 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 FGGYQ96C11 551 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 LGALS12Q96DT0 336 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 C4orf36Q96KX1 117 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 ZNF649Q9BS31 505 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 HMG20AQ9NP66 347 aa13.17□□□□□ -0.3
COL9A3-208ENST00000469802 IGKV1-12A0A0C4DH73 117 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 CYB5AP00167 134 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 IGKV1D-12P01611 117 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 ZNF20P17024 532 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 PEX2P28328 305 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 ERP29P30040 261 aaKnown RBP13.16□□□□□ -0.3
COL9A3-208ENST00000469802 OR3A1P47881 315 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 DYNLT3P51808 116 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 PDZK1IP1Q13113 114 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 GRK1Q15835 563 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 CCBE1Q6UXH8 406 aaPredicted RBP13.16□□□□□ -0.3
COL9A3-208ENST00000469802 RNF144BQ7Z419 303 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 Q8N2B8 174 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 TPRX1Q8N7U7 411 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 OR4S1Q8NGB4 309 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 OR2T6Q8NHC8 308 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 MALSU1Q96EH3 234 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 CHST6Q9GZX3 395 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 COMMD4Q9H0A8 199 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 ZNF702PQ9H963 129 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 AASSQ9UDR5 926 aa13.16□□□□□ -0.3
COL9A3-208ENST00000469802 IGHV2-26A0A0B4J1V2 119 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 A6NDX4 124 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 SNTNA6NMZ2 147 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 MGST3O14880 152 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 KDM4BO94953 1096 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 DBTP11182 482 aaKnown RBP13.15□□□□□ -0.3
COL9A3-208ENST00000469802 PRKACAP17612 351 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 GABRR1P24046 479 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 DUSP1P28562 367 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 P2RX3P56373 397 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 ALKBH1Q13686 389 aaKnown RBP13.15□□□□□ -0.3
COL9A3-208ENST00000469802 GALEQ14376 348 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 SYS1Q8N2H4 156 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 KLHDC1Q8N7A1 406 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 OR13C3Q8NGS6 347 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 OR13C9Q8NGT0 318 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 ALG8Q9BVK2 526 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 FOXJ3Q9UPW0 622 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 MYRFQ9Y2G1 1151 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 GMPPBQ9Y5P6 360 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 SESN1Q9Y6P5 492 aa13.15□□□□□ -0.3
COL9A3-208ENST00000469802 J3QLW9 94 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 OR2H2O95918 312 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 CSF1P09603 554 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 ZNF19P17023 458 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 LMO1P25800 156 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 SSX2Q16385 188 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 PLA1AQ53H76 456 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 MINOS1Q5TGZ0 78 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 Q6ZTK2 550 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 SAXO1Q8IYX7 474 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 ZNF676Q8N7Q3 588 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 DTX3Q8N9I9 347 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 RHOXF1Q8NHV9 184 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 RPS4Y2Q8TD47 263 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms