RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-209	ENST00000469511	OR5B12	Q96R08	314 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	FUZ	Q9BT04	418 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	CCDC28B	Q9BUN5	200 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	CLEC7A	Q9BXN2	247 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	KRTAP4-8	Q9BYQ9	185 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	TMEM133	Q9H2Q1	129 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	ZNF286A	Q9HBT8	521 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	KRCC1	Q9NPI7	259 aa	Predicted RBP	4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	GPR173	Q9NS66	373 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	DPM3	Q9P2X0	92 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	IL36RN	Q9UBH0	155 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	KCNG2	Q9UJ96	466 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	MPC1	Q9Y5U8	109 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	SESN1	Q9Y6P5	492 aa		4.08	□□□□□ -1.76
PTPN4-209	ENST00000469511	hCG_1809904	A0A1W2PP81	198 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511		A0A1W2PPE2	198 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511		A0A1W2PPH5	198 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511		A0A1W2PR64	198 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511		A0A1W2PRV1	198 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	MAGEA13P	A6NCF6	341 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	FAM90A18P	A6NE21	464 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	FAM90A16P	A6NEW6	464 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	FAM90A20P	A6NIJ5	464 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511		A6NIN4	97 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	FAM90A9P	A6NNJ1	464 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	FAM90A12P	A8MX19	464 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	FAM90A5P	A8MXJ8	464 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ZNF878	C9JN71	531 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511		M0QYG6	137 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	SLC1A7	O00341	560 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ANGPT2	O15123	496 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ARPC3	O15145	178 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	BRI3	O95415	125 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ZNF682	O95780	498 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	IGLV1-47	P01700	117 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	IGHV3-7	P01780	117 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	IGHG2	P01859	326 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	FAM90A15P	P0C7V4	464 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	FAM90A13P	P0C7W8	464 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	FAM90A14P	P0C7W9	464 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	FAM90A24P	P0C7X0	464 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	CDX1	P47902	265 aa	Predicted RBP	4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	UCP3	P55916	312 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	RPS16	P62249	146 aa	Known RBP	4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	GNB1	P62873	340 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	FGD3	Q5JSP0	725 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	TPTE2P1	Q5T6R2	138 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	MOB3C	Q70IA8	216 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	RRM2B	Q7LG56	351 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	SLC35E3	Q7Z769	313 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	CATSPERD	Q86XM0	798 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ANGPTL5	Q86XS5	388 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ZDHHC23	Q8IYP9	409 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ABHD12	Q8N2K0	398 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ASCC1	Q8N9N2	400 aa	Known RBP	4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	SLC37A3	Q8NCC5	494 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	CSNK2A3	Q8NEV1	391 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	PROKR2	Q8NFJ6	384 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	OR8B12	Q8NGG6	310 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	OR8D4	Q8NGM9	314 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	OR8U1	Q8NH10	309 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	FANK1	Q8TC84	345 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	CHPT1	Q8WUD6	406 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	DLX4	Q92988	240 aa	Predicted RBP	4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	PGAM5	Q96HS1	289 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	AKR1E2	Q96JD6	320 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ZNF714	Q96N38	554 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ABHD6	Q9BV23	337 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	IFT27	Q9BW83	186 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	CHST6	Q9GZX3	395 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ALX4	Q9H161	411 aa	Predicted RBP	4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	KLK15	Q9H2R5	256 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	OPA3	Q9H6K4	179 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	EGLN3	Q9H6Z9	239 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	MED20	Q9H944	212 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	HES4	Q9HCC6	221 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ISYNA1	Q9NPH2	558 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ETAA1	Q9NY74	926 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	MOB4	Q9Y3A3	225 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	HSPE1-MOB4	S4R3N1	261 aa		4.07	□□□□□ -1.76
PTPN4-209	ENST00000469511	GAGE12B	A1L429	117 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	GAGE12H	A6NDE8	117 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	ARRDC5	A6NEK1	342 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	FAM220BP	B1ANY3	271 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	BUB1B-PAK6	H3BSN5	160 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	CCRL2	O00421	344 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	NXPH2	O95156	264 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	H1F0	P07305	194 aa	Known RBP	4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	CALCB	P10092	127 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	NCK1	P16333	377 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	CNTFR	P26992	372 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	DUSP1	P28562	367 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	SLC6A1	P30531	599 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	SLC6A6	P31641	620 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	BRS3	P32247	399 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	OPRL1	P41146	370 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	HAAO	P46952	286 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	HCCS	P53701	268 aa		4.06	□□□□□ -1.76
PTPN4-209	ENST00000469511	ERVK11-1	P61568	191 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms