RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 NUP210Q8TEM1 1887 aaPredicted RBP10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 ISL1P61371 349 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 TUSC1Q2TAM9 212 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 OR52L2PQ8NGH6 319 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 PPP1R1CQ8WVI7 109 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 THYN1Q9P016 225 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 PCDHGA9Q9Y5G4 932 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 NOTCH4Q99466 2003 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 KLK8O60259 260 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 GPX5O75715 221 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 CD80P33681 288 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 ATP5SQ99766 215 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 ARG1P05089 322 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 ADRB1P08588 477 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 RASL11BQ9BPW5 248 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 TNFRSF12AQ9NP84 129 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 FLVCR2Q9UPI3 526 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 EDIL3O43854 480 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 FABP9Q0Z7S8 132 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 CXXC4Q9H2H0 198 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 ZDHHC11Q9H8X9 412 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 GLRX2Q9NS18 164 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 CYSLTR2Q9NS75 346 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 PLEKHB1Q9UF11 243 aaPredicted RBP10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 IGHV5-10-1A0A0J9YXX1 117 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 RFPL4AA6NLU0 287 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 RFPL4AL1F8VTS6 287 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 TAGLNQ01995 201 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 FAM122BQ7Z309 247 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 ASB13Q8WXK3 278 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 A0A1B0GUH1 482 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 NCR3LG1Q68D85 454 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 FA2HQ7L5A8 372 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 RFESDQ8TAC1 157 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 TET2Q6N021 2002 aaPredicted RBP10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 ZNF32P17041 273 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 SIGLEC14Q08ET2 396 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 FOXO1Q12778 655 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 ECSCRQ19T08 205 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 PRICKLE4Q2TBC4 344 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 ZNF528Q3MIS6 628 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 PDZK1IP1Q13113 114 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 HLXQ14774 488 aaPredicted RBP10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 C3AR1Q16581 482 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 SLC25A1P53007 311 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 RAE1P78406 368 aaKnown RBP10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 TOMM34Q15785 309 aaPredicted RBP10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 DPF1Q92782 380 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 HGDQ93099 445 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 RNASEK-C17orf49H0YIS7 233 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 PLPP3O14495 311 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 LY86O95711 162 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 TMEM97Q5BJF2 176 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 NHLRC1Q6VVB1 395 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 HYAL3O43820 417 aaPredicted RBP10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 KRTDAPP60985 99 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 GUCA2AQ02747 115 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 KIAA0141Q14154 515 aaPredicted RBP10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 TIGD3Q6B0B8 471 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 ASB10Q8WXI3 467 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 SONP18583 2426 aaKnown RBP10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 BRS3P32247 399 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 TGFBR1P36897 503 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 TMEM128Q5BJH2 165 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 ASCL5Q7RTU5 278 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 SMRP1Q8NCR6 262 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 TSPAN32Q96QS1 320 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 CDK2AP1O14519 115 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 LANCL1O43813 399 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 GP2P55259 537 aaKnown RBP10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 CALHM3Q86XJ0 350 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 OR2Y1Q8NGV0 311 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 SPSB1Q96BD6 273 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 NTN4Q9HB63 628 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 C21orf140B9A014 251 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 TNXAQ16473 311 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 C2orf50Q96LR7 162 aa10.72□□□□□ -0.69
CCDC88A-207ENST00000436346 ORM2P19652 201 aa10.71□□□□□ -0.69
CCDC88A-207ENST00000436346 CXorf51AA0A1B0GTR3 108 aa10.71□□□□□ -0.69
CCDC88A-207ENST00000436346 FZD6O60353 706 aa10.71□□□□□ -0.69
CCDC88A-207ENST00000436346 HOXC4P09017 264 aaPredicted RBP10.71□□□□□ -0.69
CCDC88A-207ENST00000436346 RNASEKQ6P5S7 137 aaKnown RBP10.71□□□□□ -0.69
CCDC88A-207ENST00000436346 OR2M3Q8NG83 312 aa10.71□□□□□ -0.69
CCDC88A-207ENST00000436346 KCNE1BA0A087WTH5 132 aa10.71□□□□□ -0.69
CCDC88A-207ENST00000436346 AMDHD2Q9Y303 409 aa10.71□□□□□ -0.69
CCDC88A-207ENST00000436346 CACNG5Q9UF02 275 aa10.71□□□□□ -0.69
CCDC88A-207ENST00000436346 IGHV3OR15-7A0A075B7D8 119 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 A0A1W2PRD5 423 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 A0A1W2PRF3 423 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 A0A1W2PRM7 423 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 FDX2Q6P4F2 183 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 TGIF2LYQ8IUE0 185 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 IL21Q9HBE4 155 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 OR6C3Q9NZP0 311 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 ZNF106Q9H2Y7 1883 aaKnown RBP10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 A0A1B0GTL3 188 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 SPINK2P20155 84 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 TMPRSS3P57727 454 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 PAX5Q02548 391 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 PTOV1Q86YD1 416 aa10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms