RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 RBP4P02753 201 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 ALDOBP05062 364 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 OCM2P0CE71 109 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 OCMP0CE72 109 aaPredicted RBP11.68□□□□□ -0.54
SDC1-204ENST00000429035 PF4V1P10720 104 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 PRKACAP17612 351 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 FUT6P51993 359 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 TP53I3Q53FA7 332 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 KHDC1LQ5JSQ8 128 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 Q6ZS46 218 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 Q8N2B8 174 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 OR11H6Q8NGC7 330 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 CAPSLQ8WWF8 208 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 UTP4Q969X6 686 aaKnown RBP11.68□□□□□ -0.54
SDC1-204ENST00000429035 RFT1Q96AA3 541 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 PHF21AQ96BD5 680 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 CLEC7AQ9BXN2 247 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 RIBC2Q9H4K1 309 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 RBFOX1Q9NWB1 397 aaKnown RBP11.68□□□□□ -0.54
SDC1-204ENST00000429035 WARS2Q9UGM6 360 aaKnown RBP11.68□□□□□ -0.54
SDC1-204ENST00000429035 GNG8Q9UK08 70 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 LINC00312Q9Y6C7 94 aa11.68□□□□□ -0.54
SDC1-204ENST00000429035 SIRPB1O00241 398 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 ALX3O95076 343 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 ZNF20P17024 532 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 CD33P20138 364 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 BCL3P20749 454 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 BLCAPP62952 87 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 ZNF91Q05481 1191 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 MEF2CQ06413 473 aaPredicted RBP11.67□□□□□ -0.54
SDC1-204ENST00000429035 ATP6AP1Q15904 470 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 MINOS1Q5TGZ0 78 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 PRAMEF5Q5TYX0 476 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 AMIGO2Q86SJ2 522 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 ZDHHC13Q8IUH4 622 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 OR52N4Q8NGI2 321 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 TMEM133Q9H2Q1 129 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 NECAP2Q9NVZ3 263 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 AURKAIP1Q9NWT8 199 aaPredicted RBP11.67□□□□□ -0.54
SDC1-204ENST00000429035 ENOPH1Q9UHY7 261 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 MINOS1-NBL1R4GNA1 71 aa11.67□□□□□ -0.54
SDC1-204ENST00000429035 PSPNO60542 156 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 PF4P02776 101 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 OR2T7P0C7T2 308 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 UBCP0CG48 685 aaKnown RBP11.66□□□□□ -0.54
SDC1-204ENST00000429035 CD24P25063 80 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 FASP25445 335 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 HTR1FP30939 366 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 NPBWR2P48146 333 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 ATP1B3P54709 279 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 IL18R1Q13478 541 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 Q6ZSR3 168 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 Q8IYB0 196 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 ENTHD1Q8IYW4 607 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 RDH10Q8IZV5 341 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 FAM58AQ8N1B3 248 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 SLC7A6OSQ96CW6 309 aaPredicted RBP11.66□□□□□ -0.54
SDC1-204ENST00000429035 CIB1Q99828 191 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 NEK6Q9HC98 313 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 ING3Q9NXR8 418 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 GLS2Q9UI32 602 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 GSTK1Q9Y2Q3 226 aa11.66□□□□□ -0.54
SDC1-204ENST00000429035 TRBV2A0A0J9YWF9 115 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 ADARB2-AS1A8MUL3 147 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 H3BUI4 141 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 ENTPD6O75354 484 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 MMP23AO75900 390 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 AZGP1P25311 298 aaKnown RBP11.65□□□□□ -0.54
SDC1-204ENST00000429035 HTR1DP28221 377 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 KIR3DL2P43630 455 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 RBP2P50120 134 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 MTCP1P56278 107 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 LOXL3P58215 753 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 KDM4DQ6B0I6 523 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 BAIAP2L2Q6UXY1 529 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 ZBTB49Q6ZSB9 765 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 PRSS35Q8N3Z0 413 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 CCDC54Q8NEL0 328 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 OR5AU1Q8NGC0 362 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 BCAS4Q8TDM0 211 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 ADAT3Q96EY9 351 aaPredicted RBP11.65□□□□□ -0.54
SDC1-204ENST00000429035 WNT10AQ9GZT5 417 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 GABARAPL1Q9H0R8 117 aa11.65□□□□□ -0.54
SDC1-204ENST00000429035 EXOSC4Q9NPD3 245 aaKnown RBP11.65□□□□□ -0.54
SDC1-204ENST00000429035 TRGV10A0A0A0MS01 117 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 MGST3O14880 152 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 SULT1C4O75897 302 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 ZNF44P15621 663 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 IGLL1P15814 213 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 POLR2IP36954 125 aaKnown RBP11.64□□□□□ -0.55
SDC1-204ENST00000429035 OR3A1P47881 315 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 DYNLT3P51808 116 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 ARHGDIBP52566 201 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 P2RX3P56373 397 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 C9orf152Q5JTZ5 239 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 C1orf146Q5VVC0 180 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 CCDC121Q6ZUS5 278 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 LHFPL2Q6ZUX7 228 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 OR5D18Q8NGL1 313 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 OR4P4Q8NGL7 312 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms