RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 CD99L2Q8TCZ2 262 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 EGLN1Q9GZT9 426 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 GPR35Q9HC97 309 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 COL18A1P39060 1754 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 H7BY64 318 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 DANCRP0C864 163 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ZFP36L2P47974 494 aaKnown RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 DGAT2Q96PD7 388 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 P4HTMQ9NXG6 502 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 OR1A1Q9P1Q5 309 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PLAGL1Q9UM63 463 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 RP1P56715 2156 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 HTR1DP28221 377 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 FAM3AP98173 230 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 TMEM174Q8WUU8 243 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PTX4Q96A99 478 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 VCX2Q9H322 139 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 TECRQ9NZ01 308 aaKnown RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 NAT8Q9UHE5 227 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ALOX5APP20292 161 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 SLC39A11Q8N1S5 342 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 LCORQ96JN0 433 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 UHRF2Q96PU4 802 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PLEKHA2Q9HB19 425 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ADGRL4Q9HBW9 690 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 DAPP1Q9UN19 280 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 HOXB9P17482 250 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 GPX2P18283 190 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PWWP2BQ6NUJ5 590 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 OR10AG1Q8NH19 301 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 C12orf49Q9H741 205 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 B3GALT5Q9Y2C3 310 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 IGLON5A6NGN9 336 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ZNF205O95201 554 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CD55P08174 381 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 PGFP49763 221 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ZNF506Q5JVG8 444 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 TSSC4Q9Y5U2 329 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ICE1Q9Y2F5 2266 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 HOXA11P31270 313 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 OPRD1P41143 372 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 NR0B2Q15466 257 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 CMTM8Q8IZV2 173 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 MRPL43Q8N983 215 aaKnown RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 HOXB13Q92826 284 aaPredicted RBP3.03□□□□□ -1.92
SYNE1-212ENST00000423061 SARAFQ96BY9 339 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 TWSG1Q9GZX9 223 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 ELOVL5Q9NYP7 299 aa3.03□□□□□ -1.92
SYNE1-212ENST00000423061 A0A0G2JLL6 359 aaPredicted RBP3.03□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF776Q68DI1 518 aaPredicted RBP3.03□□□□□ -1.93
SYNE1-212ENST00000423061 CLEC18BQ6UXF7 455 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 PRRT2Q7Z6L0 340 aaPredicted RBP3.03□□□□□ -1.93
SYNE1-212ENST00000423061 BOD1Q96IK1 185 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 WDR61Q9GZS3 305 aaKnown RBP3.03□□□□□ -1.93
SYNE1-212ENST00000423061 BANF2Q9H503 90 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 TMEM140Q9NV12 185 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 KNTC1P50748 2209 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 H3BUT2 72 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 PPICP45877 212 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 TMPRSS3P57727 454 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 RPS15AP62244 130 aaKnown RBP3.03□□□□□ -1.93
SYNE1-212ENST00000423061 GNB2P62879 340 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF787Q6DD87 383 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 OR4D5Q8NGN0 318 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 CAPNS2Q96L46 248 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 TRPM6Q9BX84 2022 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 SCN3AQ9NY46 2000 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 CRYAAP02489 173 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 SELPP16109 830 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 GVQW1Q8N7I0 195 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 OR5P2Q8WZ92 322 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 SMIM8Q96KF7 97 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 A4GALTQ9NPC4 353 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 HSPB8Q9UJY1 196 aa3.03□□□□□ -1.93
SYNE1-212ENST00000423061 RAB38P57729 211 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF345Q14585 488 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 OR1E3Q8WZA6 343 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 ASIC5Q9NY37 505 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 OBP2AQ9NY56 170 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 LHX3Q9UBR4 397 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 SLC22A13Q9Y226 551 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 YBX2Q9Y2T7 364 aaKnown RBP3.02□□□□□ -1.93
SYNE1-212ENST00000423061 TMEM212A6NML5 194 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 HIST1H1TP22492 207 aaPredicted RBP3.02□□□□□ -1.93
SYNE1-212ENST00000423061 LIM2P55344 173 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 COX19Q49B96 90 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF417Q8TAU3 575 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 LRFN3Q9BTN0 628 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 PLK3Q9H4B4 646 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 A0A1W2PR48 441 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 FAM231BA6NCW3 169 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 TRAPPC2LH3BP13 241 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 MPIG6BO95866 241 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 BAHD1Q8TBE0 780 aaPredicted RBP3.02□□□□□ -1.93
SYNE1-212ENST00000423061 C5orf30Q96GV9 206 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 SVILO95425 2214 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 ISLRO14498 428 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 FABP2P12104 132 aa3.02□□□□□ -1.93
SYNE1-212ENST00000423061 PMP22Q01453 160 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms