RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 POLR1DQ9Y2S0 133 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 CST7O76096 145 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 HPNP05981 417 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 DBHP09172 617 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 TMEM225BP0DP42 221 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 FOSL2P15408 326 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 IDH3GP51553 393 aaPredicted RBP12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 TDGF1P3P51864 188 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 TAF9Q16594 264 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 DMRTA1Q5VZB9 504 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 BTNL3Q6UXE8 466 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 ZNF66Q6ZN08 573 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 ARL6IP6Q8N6S5 226 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 ZNF519Q8TB69 540 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 TMEM37Q8WXS4 190 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 C5orf34Q96MH7 638 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 ACTR3CQ9C0K3 210 aaPredicted RBP12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 MAGT1Q9H0U3 335 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 SMDT1Q9H4I9 107 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 HRASLS2Q9NWW9 162 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 DKKL1Q9UK85 242 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 LAMP3Q9UQV4 416 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 ASPMQ8IZT6 3477 aa12.88□□□□□ -0.35
NCKIPSD-204ENST00000416649 TRAV36DV7A0A075B6V5 113 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 IGKV1D-43A0A0B4J1Z2 117 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 GPR89AB7ZAQ6 455 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 UTS2O95399 124 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 GPR89BP0CG08 455 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 GABRR1P24046 479 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 C6orf201Q7Z4U5 140 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 SLC35E3Q7Z769 313 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 SNIP1Q8TAD8 396 aaKnown RBP12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 SLC37A2Q8TED4 501 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 SLAMF6Q96DU3 332 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 PRDM6Q9NQX0 595 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 C2orf72A6NCS6 295 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 ZNF850A8MQ14 1090 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 OPN1LWP04000 364 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 CD55P08174 381 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 LMO1P25800 156 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 HERPUD1Q15011 391 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 C1QL2Q7Z5L3 287 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 OR10A7Q8NGE5 316 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 RHBDD1Q8TEB9 315 aa12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 RTN4IP1Q8WWV3 396 aaPredicted RBP12.87□□□□□ -0.35
NCKIPSD-204ENST00000416649 A0A1B0GW64 132 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 CRYM-AS1A6NIL9 109 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 H0YIG0 161 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 IL11P20809 199 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 OPRM1P35372 400 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 ERVS71-1P61550 626 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 KIR2DS3Q14952 304 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 HOXB13Q92826 284 aaPredicted RBP12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 PRTFDC1Q9NRG1 225 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 GPR173Q9NS66 373 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 MED29Q9NX70 200 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 SHANK1Q9Y566 2161 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 HSPB1P04792 205 aaKnown RBP12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 RRADP55042 308 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 VAMP2P63027 116 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 SGCBQ16585 318 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 MPV17LQ2QL34 196 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 CMTM1Q8IZ96 169 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 ZNF321PQ8N8H1 164 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 OR2AJ1Q8NGZ0 328 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 FLVCR1-AS1Q8TAF5 88 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 EMC6Q9BV81 110 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 PHF7Q9BWX1 381 aaPredicted RBP12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 FAM60AQ9NP50 221 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 FAM206AQ9NX38 181 aa12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 COLQQ9Y215 455 aaPredicted RBP12.86□□□□□ -0.35
NCKIPSD-204ENST00000416649 TGOLN2O43493 480 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 CNOT4O95628 575 aaKnown RBP12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 MYF5P13349 255 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 SFTPDP35247 375 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 ZNF266Q14584 549 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 ARHGEF39Q8N4T4 335 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 ZNF248Q8NDW4 579 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 ADGRG7Q96K78 797 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 C1orf147Q96MC9 270 aaPredicted RBP12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 NXF5Q9H1B4 397 aaKnown RBP12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 RIMS4Q9H426 269 aaPredicted RBP12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 HSPA12AO43301 675 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 GCGP01275 180 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 DUSP1P28562 367 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 GPR3P46089 330 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 POLR2HP52434 150 aaKnown RBP12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 CLN3Q13286 438 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 ALKBH2Q6NS38 261 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 OR5AS1Q8N127 324 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 OR2C3Q8N628 320 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 R3HDM4Q96D70 268 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 ANAPC10Q9UM13 185 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 PHF3Q92576 2039 aaKnown RBP12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 ZNF705FA8MVS1 300 aaPredicted RBP12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 TNFP01375 233 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 CTSDP07339 412 aaPredicted RBP12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 ZNF705DP0CH99 300 aaPredicted RBP12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 ZNF705BP0CI00 300 aaPredicted RBP12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 OR5C1Q8NGR4 320 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms