RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 C14orf166Q9Y224 244 aaKnown RBP12.8□□□□□ -0.36
USP4-203ENST00000415188 PINLYPA6NC86 204 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 FAM25EA8MYX2 175 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 NRASP01111 189 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 CSTBP04080 98 aaKnown RBP12.79□□□□□ -0.36
USP4-203ENST00000415188 B4GALT1P15291 398 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 GRNP28799 593 aaKnown RBP12.79□□□□□ -0.36
USP4-203ENST00000415188 NTF4P34130 210 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 SERPINF1P36955 418 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 PMELP40967 661 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 STARP49675 285 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 NPY4RP50391 375 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 FUT6P51993 359 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 CLDN15P56746 228 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 RBPJQ06330 500 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 OR8B8Q15620 311 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 C3AR1Q16581 482 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 RNFT1Q5M7Z0 435 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 AADACL3Q5VUY0 350 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 OR10K1Q8NGX5 313 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 SPSB4Q96A44 273 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 SEC22AQ96IW7 307 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 RTBDNQ9BSG5 229 aaPredicted RBP12.79□□□□□ -0.36
USP4-203ENST00000415188 ST6GALNAC5Q9BVH7 336 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 ZNF703Q9H7S9 590 aaPredicted RBP12.79□□□□□ -0.36
USP4-203ENST00000415188 CHMP1AQ9HD42 196 aaPredicted RBP12.79□□□□□ -0.36
USP4-203ENST00000415188 PLEKHJ1Q9NW61 149 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 RASL12Q9NYN1 266 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 TINAGQ9UJW2 476 aa12.79□□□□□ -0.36
USP4-203ENST00000415188 A8MXK9 166 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 RPL36A-HNRNPH2H7BZ11 118 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 NME2P1O60361 137 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 SPDEFO95238 335 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 HTR3BO95264 441 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 FGF2P09038 288 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 MMP7P09237 267 aaPredicted RBP12.78□□□□□ -0.36
USP4-203ENST00000415188 COX5BP10606 129 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 LYL1P12980 280 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 ZNF250P15622 560 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 NME2P22392 152 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 HGFACQ04756 655 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 SP5Q6BEB4 398 aaPredicted RBP12.78□□□□□ -0.36
USP4-203ENST00000415188 MRGPRGQ86SM5 289 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 OR1S1Q8NH92 325 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 AKR7LQ8NHP1 331 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 CXorf58Q96LI9 332 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 ARPC5LQ9BPX5 153 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 MBD2Q9UBB5 411 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 NOSIPQ9Y314 301 aaKnown RBP12.78□□□□□ -0.36
USP4-203ENST00000415188 MEMO1Q9Y316 297 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 TEX13DA0A0J9YY54 714 aaPredicted RBP12.78□□□□□ -0.36
USP4-203ENST00000415188 ZNF816-ZNF321PA0A0X1KG74 233 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 EEF1E1-BLOC1S5C9J1V9 151 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 MRPL33O75394 65 aaKnown RBP12.78□□□□□ -0.36
USP4-203ENST00000415188 SYNGR4O95473 234 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 RLN2P04090 185 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 CTSDP07339 412 aaPredicted RBP12.78□□□□□ -0.36
USP4-203ENST00000415188 PET100P0DJ07 73 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 LHX2P50458 406 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 NAAAQ02083 359 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 MOB3CQ70IA8 216 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 SKA3Q8IX90 412 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 ZSCAN4Q8NAM6 433 aaPredicted RBP12.78□□□□□ -0.36
USP4-203ENST00000415188 OR2AE1Q8NHA4 323 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 STOML3Q8TAV4 291 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 ZNF775Q96BV0 537 aaPredicted RBP12.78□□□□□ -0.36
USP4-203ENST00000415188 C1QTNF5Q9BXJ0 243 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 BCO1Q9HAY6 547 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 DECR2Q9NUI1 292 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 ZNF835Q9Y2P0 537 aa12.78□□□□□ -0.36
USP4-203ENST00000415188 ZNF724A8MTY0 619 aa12.77□□□□□ -0.37
USP4-203ENST00000415188 PGAM2P15259 253 aa12.77□□□□□ -0.37
USP4-203ENST00000415188 NUP62P37198 522 aaPredicted RBP12.77□□□□□ -0.37
USP4-203ENST00000415188 RFC3P40938 356 aa12.77□□□□□ -0.37
USP4-203ENST00000415188 CASP6P55212 293 aa12.77□□□□□ -0.37
USP4-203ENST00000415188 SUPT4H1P63272 117 aaKnown RBP12.77□□□□□ -0.37
USP4-203ENST00000415188 ADORA2A-AS1P86434 159 aa12.77□□□□□ -0.37
USP4-203ENST00000415188 FAM3AP98173 230 aa12.77□□□□□ -0.37
USP4-203ENST00000415188 LRRC37A5PQ49AS3 106 aa12.77□□□□□ -0.37
USP4-203ENST00000415188 KRTCAP3Q53RY4 240 aa12.77□□□□□ -0.37
USP4-203ENST00000415188 COLCA1Q6ZS62 124 aa12.77□□□□□ -0.37
USP4-203ENST00000415188 C2orf50Q96LR7 162 aa12.77□□□□□ -0.37
USP4-203ENST00000415188 ZNF471Q9BX82 626 aaPredicted RBP12.77□□□□□ -0.37
USP4-203ENST00000415188 ZNF701Q9NV72 531 aaPredicted RBP12.77□□□□□ -0.37
USP4-203ENST00000415188 ANXA10Q9UJ72 324 aa12.77□□□□□ -0.37
USP4-203ENST00000415188 MYO9AB2RTY4 2548 aa12.77□□□□□ -0.37
USP4-203ENST00000415188 CREBBPQ92793 2442 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 C13orf42A0A1B0GVH6 325 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM230AA0A1W2PPH8 454 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A10PA6NDY2 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A18PA6NE21 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A16PA6NEW6 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A20PA6NIJ5 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A8PA6NJQ4 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A7PA6NKC0 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A22PA8MWA6 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A12PA8MX19 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A5PA8MXJ8 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A23PA8MXZ1 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 F8VVB4 439 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms