RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PDLIM5Q96HC4 596 aaKnown RBP11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 KNDC1Q76NI1 1749 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 DUSP2Q05923 314 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 SELENBP1Q13228 472 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 OR4B1Q8NGF8 309 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 LRRC3BQ96PB8 259 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 GFRA2O00451 464 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 FCGR3BO75015 233 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 PRSS2P07478 247 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 SLC48A1Q6P1K1 146 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 SAP30LQ9HAJ7 183 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 AQP6Q13520 282 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 LYG1Q8N1E2 194 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 RNF167Q9H6Y7 350 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 RER1O15258 196 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 SLC25A17O43808 307 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 Q5PR19 223 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 BEX4Q9NWD9 120 aaPredicted RBP11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 A0A1B0GUL6 1792 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 SNURFLB1AK76 121 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 ZNF441Q8N8Z8 693 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 UBTD2Q8WUN7 234 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 TEX101Q9BY14 249 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 CMC2Q9NRP2 79 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 INHBBP09529 407 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 MFAP4P55083 255 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 EVX2Q03828 476 aa11.96□□□□□ -0.49
CCDC88A-204ENST00000413716 C3orf85A0A1B0GTC6 90 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 J3KRW8 73 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 FAM181BA6NEQ2 426 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 HPXP02790 462 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 SMIM13P0DJ93 91 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 LINC00052Q96N35 136 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 DNAJB12Q9NXW2 375 aaKnown RBP11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 SS18L1O75177 396 aaPredicted RBP11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 FUT3P21217 361 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 PIANPQ8IYJ0 282 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 ST8SIA1Q92185 356 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 CRISPLD2Q9H0B8 497 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 MT-CO3P00414 261 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 SPINK9Q5DT21 86 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 C12orf76Q8N812 135 aaPredicted RBP11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 TMEM99Q8N816 258 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 ABHD14AQ9BUJ0 271 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 HAPLN2Q9GZV7 340 aa11.96□□□□□ -0.5
CCDC88A-204ENST00000413716 CDX4O14627 284 aaPredicted RBP11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 LIM2P55344 173 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 OR4P4Q8NGL7 312 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 IL17CQ9P0M4 197 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 FABP5Q01469 135 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 C10orf113Q5VZT2 155 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 HEATR5AQ86XA9 2040 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 TMEM204Q9BSN7 226 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 TRAV8-7A0A075B6U6 113 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 CD74P04233 296 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 UBE2V2Q15819 145 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 PMCHL1Q16048 86 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 ZNF506Q5JVG8 444 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 STXBP6Q8NFX7 210 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 SPRY1O43609 319 aaPredicted RBP11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 GNG7O60262 68 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 ARIH2OSQ8N7S6 290 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 OR4S2Q8NH73 311 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 VAX2Q9UIW0 290 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 ZNF646O15015 1829 aaPredicted RBP11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 RECKO95980 971 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 PMCHL2Q9BQD1 86 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 IL23AQ9NPF7 189 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 LIAT1Q6ZQX7 453 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 DOCK5Q9H7D0 1870 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 B3GALT4O96024 378 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 ZNF273Q14593 569 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 LINC00303Q3SY05 128 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 C6orf15Q6UXA7 325 aaPredicted RBP11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 TRILQ7L0X0 811 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 BCORP1Q8N888 145 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 SLCO1C1Q9NYB5 712 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 PRSS21Q9Y6M0 314 aa11.95□□□□□ -0.5
CCDC88A-204ENST00000413716 PPIHO43447 177 aaKnown RBP11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 B4GALT1P15291 398 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 CTSCP53634 463 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 VWA2Q5GFL6 755 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 WDFY1Q8IWB7 410 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 SYS1Q8N2H4 156 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 A0A1B0GV90 55 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 ARG1P05089 322 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 PSG5Q15238 335 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 CTF1Q16619 201 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 MS4A8Q9BY19 250 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 WNT16Q9UBV4 365 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 SPICQ8N5J4 248 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 PKIBQ9C010 78 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 KLF13Q9Y2Y9 288 aaPredicted RBP11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 ARFGEF3Q5TH69 2177 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 COL19A1Q14993 1142 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 SPATA46Q5T0L3 261 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 ACSM5Q6NUN0 579 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 SLC35E3Q7Z769 313 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 OR5A1Q8NGJ0 315 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms