RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 C10orf128Q5T292 105 aa7.48□□□□□ -1.21
SYNE1-211ENST00000413186 CLEC9AQ6UXN8 241 aa7.48□□□□□ -1.21
SYNE1-211ENST00000413186 IDO2Q6ZQW0 420 aa7.48□□□□□ -1.21
SYNE1-211ENST00000413186 CELF2-AS1Q8N7Q2 184 aa7.48□□□□□ -1.21
SYNE1-211ENST00000413186 SMIM4Q8WVI0 70 aa7.48□□□□□ -1.21
SYNE1-211ENST00000413186 ST6GALNAC5Q9BVH7 336 aa7.48□□□□□ -1.21
SYNE1-211ENST00000413186 NXF2Q9GZY0 626 aaKnown RBP7.48□□□□□ -1.21
SYNE1-211ENST00000413186 CACNA1GO43497 2377 aa7.48□□□□□ -1.21
SYNE1-211ENST00000413186 IGLV1-36A0A0B4J1U3 117 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 SH2D1BO14796 132 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 NPIPB7O75200 414 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 SRPXP78539 464 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 FCN2Q15485 313 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 SLC25A35Q3KQZ1 300 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 SPATA46Q5T0L3 261 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 LYPD8Q6UX82 237 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 OR6F1Q8NGZ6 308 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 CMTM2Q8TAZ6 248 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 OR2D2Q9H210 308 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 ELOVL5Q9NYP7 299 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 TRAPPC2LQ9UL33 140 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 ALPK2Q86TB3 2170 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 A0A0D9SG52 128 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 ZNF732B4DXR9 585 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 RPLP1P05386 114 aaKnown RBP7.47□□□□□ -1.21
SYNE1-211ENST00000413186 SULT1A3P0DMM9 295 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 SULT1A4P0DMN0 295 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 GAAP10253 952 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 PTAFRP25105 342 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 IL13RA1P78552 427 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 SMIM21Q3B7S5 101 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 HIKESHIQ53FT3 197 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 DMKNQ6E0U4 476 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-211ENST00000413186 Q6ZS92 163 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 RFPL4BQ6ZWI9 263 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 WDYHV1Q96HA8 205 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 ZNF275Q9NSD4 429 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-211ENST00000413186 SNRPGP15A8MWD9 76 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 SLC17A2O00624 439 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 GOSR2O14653 212 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 ZNF354AO60765 605 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-211ENST00000413186 COX5BP10606 129 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 GLRA1P23415 457 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 LHX2P50458 406 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 PLAC9Q5JTB6 97 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 NSUN5P2Q63ZY6 315 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 OR2T2Q6IF00 324 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 S100A7AQ86SG5 101 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 LINC00469Q8N7U9 141 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 ADAT1Q9BUB4 502 aaKnown RBP7.47□□□□□ -1.21
SYNE1-211ENST00000413186 ZNF106Q9H2Y7 1883 aaKnown RBP7.47□□□□□ -1.21
SYNE1-211ENST00000413186 RNF122Q9H9V4 155 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 ATXN7O15265 892 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-211ENST00000413186 ICMTO60725 284 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 AKR1C4P17516 323 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 HAAOP46952 286 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 TAS2R20P59543 309 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 Q6ZT83 130 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 SLC25A26Q70HW3 274 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 MDP1Q86V88 176 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 NANPQ8TBE9 248 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 ADAMTS17Q8TE56 1095 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 C20orf85Q9H1P6 137 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 RANGRFQ9HD47 186 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-211ENST00000413186 RNF24Q9Y225 148 aa7.47□□□□□ -1.21
SYNE1-211ENST00000413186 A0A1B0GV72 72 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 SIAH2O43255 324 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 ACSM4P0C7M7 580 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 STAG3L3P0CL85 134 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 NAT2P11245 290 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 TGFBR1P36897 503 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 SUCLG1P53597 346 aaKnown RBP7.46□□□□□ -1.21
SYNE1-211ENST00000413186 CLDN18P56856 261 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 UBE2G2P60604 165 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 RNF212Q495C1 297 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 NRN1LQ496H8 165 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 ACSF3Q4G176 576 aaPredicted RBP7.46□□□□□ -1.21
SYNE1-211ENST00000413186 OR8B12Q8NGG6 310 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 OR1K1Q8NGR3 316 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 ELMOD3Q96FG2 381 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 OPN3Q9H1Y3 402 aaPredicted RBP7.46□□□□□ -1.21
SYNE1-211ENST00000413186 KIR2DS1A0A191URI9 304 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 GPR37O15354 613 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 XRCC3O43542 346 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 ADRB1P08588 477 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 KIR2DS4P43632 304 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 ROM1Q03395 351 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 KIR2DS1Q14954 304 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 HYAL4Q2M3T9 481 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 FAM122BQ7Z309 247 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 FAM185AQ8N0U4 392 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 ARL11Q969Q4 196 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 CMBLQ96DG6 245 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 CYB5R1Q9UHQ9 305 aa7.46□□□□□ -1.21
SYNE1-211ENST00000413186 SNRNP200O75643 2136 aaKnown RBP7.46□□□□□ -1.22
SYNE1-211ENST00000413186 COL4A3Q01955 1670 aa7.46□□□□□ -1.22
SYNE1-211ENST00000413186 CD300LBA8K4G0 201 aa7.46□□□□□ -1.22
SYNE1-211ENST00000413186 RGS11O94810 467 aa7.46□□□□□ -1.22
SYNE1-211ENST00000413186 MMP7P09237 267 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-211ENST00000413186 NLRC3Q7RTR2 1065 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms