RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 EDDM3AQ14507 147 aa16.21■□□□□ 0.19
USP48-204ENST00000400301 OR2B11Q5JQS5 317 aa16.21■□□□□ 0.19
USP48-204ENST00000400301 NDRG3Q9UGV2 375 aa16.21■□□□□ 0.19
USP48-204ENST00000400301 TERTO14746 1132 aaKnown RBP16.21■□□□□ 0.19
USP48-204ENST00000400301 RPL19P84098 196 aaKnown RBP16.21■□□□□ 0.19
USP48-204ENST00000400301 DHODHQ02127 395 aa16.21■□□□□ 0.19
USP48-204ENST00000400301 NFAM1Q8NET5 270 aaPredicted RBP16.21■□□□□ 0.19
USP48-204ENST00000400301 POC1BQ8TC44 478 aa16.21■□□□□ 0.19
USP48-204ENST00000400301 IER2Q9BTL4 223 aa16.21■□□□□ 0.19
USP48-204ENST00000400301 CYC1P08574 325 aa16.21■□□□□ 0.19
USP48-204ENST00000400301 ZNF17P17021 662 aa16.21■□□□□ 0.19
USP48-204ENST00000400301 RAB5CP51148 216 aa16.21■□□□□ 0.19
USP48-204ENST00000400301 SPANXN5Q5MJ07 72 aa16.21■□□□□ 0.19
USP48-204ENST00000400301 CLDN16Q9Y5I7 305 aa16.21■□□□□ 0.19
USP48-204ENST00000400301 URGCP-MRPS24S4R325 110 aa16.21■□□□□ 0.19
USP48-204ENST00000400301 C3orf85A0A1B0GTC6 90 aa16.21■□□□□ 0.18
USP48-204ENST00000400301 LRP5LA4QPB2 252 aa16.21■□□□□ 0.18
USP48-204ENST00000400301 PRF1P14222 555 aa16.21■□□□□ 0.18
USP48-204ENST00000400301 IRF2P14316 349 aa16.21■□□□□ 0.18
USP48-204ENST00000400301 CBR1P16152 277 aa16.21■□□□□ 0.18
USP48-204ENST00000400301 NKX6-1P78426 367 aaPredicted RBP16.21■□□□□ 0.18
USP48-204ENST00000400301 ZNF808Q8N4W9 903 aaPredicted RBP16.21■□□□□ 0.18
USP48-204ENST00000400301 MARVELD3Q96A59 401 aa16.21■□□□□ 0.18
USP48-204ENST00000400301 SLC2A9Q9NRM0 540 aa16.21■□□□□ 0.18
USP48-204ENST00000400301 UQCC1Q9NVA1 299 aa16.21■□□□□ 0.18
USP48-204ENST00000400301 SLC2A8Q9NY64 477 aa16.21■□□□□ 0.18
USP48-204ENST00000400301 OR5AC2Q9NZP5 309 aa16.21■□□□□ 0.18
USP48-204ENST00000400301 IAPPP10997 89 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 MZT1Q08AG7 82 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 GUK1Q16774 197 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 TUSC5Q8IXB3 177 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 TCEAL3Q969E4 200 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 SAT2Q96F10 170 aaPredicted RBP16.2■□□□□ 0.18
USP48-204ENST00000400301 LPAR3Q9UBY5 353 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 FAM24AA6NFZ4 105 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 SH2D1BO14796 132 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 MECP2P51608 486 aaKnown RBP16.2■□□□□ 0.18
USP48-204ENST00000400301 UBE2V2Q15819 145 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 THNSL2Q86YJ6 484 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 STPG2Q8N412 459 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 ZNF441Q8N8Z8 693 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 CA6P23280 308 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 ELLP55199 621 aaPredicted RBP16.2■□□□□ 0.18
USP48-204ENST00000400301 LYZL2Q7Z4W2 148 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 C5orf66Q9H5L9 145 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 C19orf12Q9NSK7 152 aa16.2■□□□□ 0.18
USP48-204ENST00000400301 RSPO4Q2I0M5 234 aaPredicted RBP16.19■□□□□ 0.18
USP48-204ENST00000400301 LCN15Q6UWW0 184 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 OVCH2Q7RTZ1 564 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 ADAM20O43506 726 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 DTYMKP23919 212 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 RAB11AP62491 216 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 PSG4Q00888 419 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 C17orf82Q86X59 251 aaPredicted RBP16.19■□□□□ 0.18
USP48-204ENST00000400301 DMBX1Q8NFW5 382 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 PFDN5Q99471 154 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 GDF9O60383 454 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 CALCRP30988 508 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 SNAI3Q3KNW1 292 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 LIAT1Q6ZQX7 453 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 FAM234AQ9H0X4 552 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 ATPIF1Q9UII2 106 aa16.19■□□□□ 0.18
USP48-204ENST00000400301 ERRFI1Q9UJM3 462 aaPredicted RBP16.19■□□□□ 0.18
USP48-204ENST00000400301 A0A1W2PR80 420 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 ADAM10O14672 748 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 OR2C3Q8N628 320 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 OR8U1Q8NH10 309 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 TRIB1Q96RU8 372 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 TRGV5A0A0B4J1U4 118 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 A0A1W2PPV4 95 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 MEOX1P50221 254 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 C3AR1Q16581 482 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 TMEM123Q8N131 208 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 SLC25A28Q96A46 364 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 OPA3Q9H6K4 179 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 GNG13Q9P2W3 67 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 PILRBQ9UKJ0 227 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 RNF150Q9ULK6 438 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 STARD10Q9Y365 291 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 A0A1B0GTI1 187 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 MT-CO3P00414 261 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 POLR2GP62487 172 aaKnown RBP eCLIP16.18■□□□□ 0.18
USP48-204ENST00000400301 BAXQ07812 192 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 ANKRD55Q3KP44 614 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 FAM58AQ8N1B3 248 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 LHFPL5Q8TAF8 219 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 SLC26A1Q9H2B4 701 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 IGLV3-12A0A075B6K2 115 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 PPYP01298 95 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 COX6A1P12074 109 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 DVL1P1P54792 670 aaPredicted RBP16.18■□□□□ 0.18
USP48-204ENST00000400301 TESK1Q15569 626 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 MUCL1Q96DR8 90 aa16.18■□□□□ 0.18
USP48-204ENST00000400301 CHCHD2Q9Y6H1 151 aaPredicted RBP16.18■□□□□ 0.18
USP48-204ENST00000400301 MPGP29372 298 aa16.17■□□□□ 0.18
USP48-204ENST00000400301 MAGEA5P43359 124 aa16.17■□□□□ 0.18
USP48-204ENST00000400301 P2RY4P51582 365 aa16.17■□□□□ 0.18
USP48-204ENST00000400301 RNPS1Q15287 305 aaKnown RBP16.17■□□□□ 0.18
USP48-204ENST00000400301 PLAC9Q5JTB6 97 aa16.17■□□□□ 0.18
USP48-204ENST00000400301 CBLN2Q8IUK8 224 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms