RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ZNF701Q9NV72 531 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-204ENST00000392003 C14orf166Q9Y224 244 aaKnown RBP8.42□□□□□ -1.06
COL6A3-204ENST00000392003 TMEM210A6NLX4 147 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 YIF1AO95070 293 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 TNFSF15O95150 251 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 HPP00738 406 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 GDF1P27539 372 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 SERPINF1P36955 418 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 SUCLG1P53597 346 aaKnown RBP8.42□□□□□ -1.06
COL6A3-204ENST00000392003 HIST1H3AP68431 136 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 RSU1Q15404 277 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 SLC9A3R2Q15599 337 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 UBE2V2Q15819 145 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 BEX5Q5H9J7 111 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 NKAPLQ5M9Q1 402 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 HIST2H3PS2Q5TEC6 136 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 ELP2Q6IA86 826 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 HIST2H3AQ71DI3 136 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 GALNTL5Q7Z4T8 443 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 PPP1R32Q7Z5V6 425 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 FAM89BQ8N5H3 189 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 TCEAL7Q9BRU2 100 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 PECRQ9BY49 303 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 METTL8Q9H825 291 aaKnown RBP8.42□□□□□ -1.06
COL6A3-204ENST00000392003 GPR173Q9NS66 373 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 PLEKHJ1Q9NW61 149 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 FOXD3Q9UJU5 478 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-204ENST00000392003 GPR132Q9UNW8 380 aa8.42□□□□□ -1.06
COL6A3-204ENST00000392003 C5orf63A6NC05 138 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 GOSR1O95249 250 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 CST2P09228 141 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 CD59P13987 128 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 PSMB6P28072 239 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 ALDH3B1P43353 468 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 LUMP51884 338 aaPredicted RBP8.41□□□□□ -1.06
COL6A3-204ENST00000392003 PCBD1P61457 104 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 RTN4RL2Q86UN3 420 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 PXT1Q8NFP0 134 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 OR1F12Q8NHA8 337 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 OR2V1Q8NHB1 315 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 CPT1CQ8TCG5 803 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 MRPS18CQ9Y3D5 142 aaKnown RBP8.41□□□□□ -1.06
COL6A3-204ENST00000392003 MYO15AQ9UKN7 3530 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 FAM230AA0A1W2PPH8 454 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 E9PLN8 166 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 RAD51DO75771 328 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 SFT2D2O95562 160 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 IGLV3-1P01715 115 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 SERPINA7P05543 415 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 GABRR1P24046 479 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 OTX1P32242 354 aaPredicted RBP8.41□□□□□ -1.06
COL6A3-204ENST00000392003 CD200P41217 278 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 HES3Q5TGS1 186 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 C1QL2Q7Z5L3 287 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 MRGPRFQ96AM1 343 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 SPSB1Q96BD6 273 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 BORCS8Q96FH0 119 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 REEP6Q96HR9 211 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 ANAPC10Q9UM13 185 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 FLVCR1Q9Y5Y0 555 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 IFITM10A6NMD0 228 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 SDCBPO00560 298 aaPredicted RBP8.41□□□□□ -1.06
COL6A3-204ENST00000392003 FARS2O95363 451 aaKnown RBP8.41□□□□□ -1.06
COL6A3-204ENST00000392003 RNF151Q2KHN1 245 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 WIPI1Q5MNZ9 446 aaPredicted RBP8.41□□□□□ -1.06
COL6A3-204ENST00000392003 LINC00696Q6ZRV3 163 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 TMEM185AQ8NFB2 350 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 DCUN1D4Q92564 292 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 TOLLIPQ9H0E2 274 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 TMEM38BQ9NVV0 291 aa8.41□□□□□ -1.06
COL6A3-204ENST00000392003 WNT5AP41221 380 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 SOX8P57073 446 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 ZNF774Q6NX45 483 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 SLC16A14Q7RTX9 510 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 OR10D3Q8NH80 312 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 NEK7Q8TDX7 302 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 SSC4DQ8WTU2 575 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 ALKBH3Q96Q83 286 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-204ENST00000392003 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.4□□□□□ -1.06
COL6A3-204ENST00000392003 LRFN1Q9P244 771 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 BOKQ9UMX3 212 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-204ENST00000392003 SLC7A11Q9UPY5 501 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 MEMO1Q9Y316 297 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 TIMM10BQ9Y5J6 103 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 NCOA6Q14686 2063 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-204ENST00000392003 A0A0B4J2A0 478 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 DHRS7CA6NNS2 312 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 TMEM238C9JI98 176 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 HPNP05981 417 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 PI3P19957 117 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 ANOS1P23352 680 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 BMI1P35226 326 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 RBMXP38159 391 aaKnown RBP8.4□□□□□ -1.06
COL6A3-204ENST00000392003 ECI1P42126 302 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 PLGLB1Q02325 96 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 JMJD6Q6NYC1 403 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-204ENST00000392003 PLXDC2Q6UX71 529 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 OR5AP2Q8NGF4 316 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 OR2AE1Q8NHA4 323 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 EMG1Q92979 244 aaKnown RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms