RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TPRP12270 2363 aaKnown RBP11.71□□□□□ -0.53
PTPRF-202ENST00000372405 A0A1B0GWJ7 208 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM221AA4D161 298 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A10PA6NDY2 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A18PA6NE21 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A16PA6NEW6 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A20PA6NIJ5 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A8PA6NJQ4 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A7PA6NKC0 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A22PA8MWA6 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A12PA8MX19 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A5PA8MXJ8 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A23PA8MXZ1 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 ATP6V1G2-DDX39BF2Z307 99 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 TIMM8AO60220 97 aaPredicted RBP11.71□□□□□ -0.53
PTPRF-202ENST00000372405 CRYAAP02489 173 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FCGR3AP08637 254 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A15PP0C7V4 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A13PP0C7W8 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A14PP0C7W9 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 FAM90A24PP0C7X0 464 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 PRKACAP17612 351 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 GCH1P30793 250 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 ERVK11-1P61568 191 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 MAB21L1Q13394 359 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 ZNF626Q68DY1 528 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 RGS7BPQ6MZT1 257 aaPredicted RBP11.71□□□□□ -0.53
PTPRF-202ENST00000372405 C1orf174Q8IYL3 243 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 ST6GALNAC3Q8NDV1 305 aa11.71□□□□□ -0.53
PTPRF-202ENST00000372405 DACT3Q96B18 629 aaPredicted RBP11.71□□□□□ -0.53
PTPRF-202ENST00000372405 CMSS1Q9BQ75 279 aaKnown RBP11.71□□□□□ -0.53
PTPRF-202ENST00000372405 RCC2Q9P258 522 aaKnown RBP11.71□□□□□ -0.53
PTPRF-202ENST00000372405 TMEM82A0PJX8 343 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 F5H5P2 479 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 SDCBPO00560 298 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-202ENST00000372405 CDIPTO14735 213 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 THBDP07204 575 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 SULT1A3P0DMM9 295 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 SULT1A4P0DMN0 295 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 ZNF250P15622 560 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 CA7P43166 264 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 ZMYND11Q15326 602 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 PCSK4Q6UW60 755 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 C17orf107Q6ZR85 190 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 C11orf53Q8IXP5 236 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 TCTE3Q8IZS6 198 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 FAM58AQ8N1B3 248 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 TMEM171Q8WVE6 324 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 GTF3AQ92664 365 aaKnown RBP11.7□□□□□ -0.54
PTPRF-202ENST00000372405 COL6A6A6NMZ7 2263 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 SMG1Q96Q15 3661 aaKnown RBP11.7□□□□□ -0.54
PTPRF-202ENST00000372405 GRPP07492 148 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 DTYMKP23919 212 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 CD40P25942 277 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 GLRXP35754 106 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 ACTBL2Q562R1 376 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 C1QTNF12Q5T7M4 302 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 KDF1Q8NAX2 398 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-202ENST00000372405 OR5AP2Q8NGF4 316 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 OR5H2Q8NGV7 314 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 ICE1Q9Y2F5 2266 aa11.7□□□□□ -0.54
PTPRF-202ENST00000372405 KALRNO60229 2985 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 TMEM210A6NLX4 147 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 SNRPGP15A8MWD9 76 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 ATXN7O15265 892 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-202ENST00000372405 SSNA1O43805 119 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 IFNA6P05013 189 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 PGA5P0DJD9 388 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 RBMXP38159 391 aaKnown RBP11.69□□□□□ -0.54
PTPRF-202ENST00000372405 PMELP40967 661 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 HOXA4Q00056 320 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-202ENST00000372405 IKZF1Q13422 519 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 MPV17LQ2QL34 196 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 TMEM211Q6ICI0 200 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 OVCH2Q7RTZ1 564 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 TMED4Q7Z7H5 227 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 ARRDC1Q8N5I2 433 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 OR13G1Q8NGZ3 307 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 NRIP2Q9BQI9 281 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 ALX4Q9H161 411 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-202ENST00000372405 ZNF442Q9H7R0 627 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 ZNF69Q9UC07 566 aa11.69□□□□□ -0.54
PTPRF-202ENST00000372405 SMLR1H3BR10 107 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 TAS2R46P59540 309 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 MPPED2Q15777 294 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 ZFP69Q49AA0 526 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 AADACL3Q5VUY0 350 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 ZNF826PQ6ZT77 177 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 LHFPL1Q86WI0 220 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 MUC20Q8N307 709 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-202ENST00000372405 TERB2Q8NHR7 220 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 TLNRD1Q9H1K6 362 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 CXXC4Q9H2H0 198 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 PLK3Q9H4B4 646 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 MYOZ1Q9NP98 299 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-202ENST00000372405 EHFQ9NZC4 300 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 DUSP13Q9UII6 198 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 ANXA10Q9UJ72 324 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 TRAV24A0A0B4J272 114 aa11.68□□□□□ -0.54
PTPRF-202ENST00000372405 CEACAM18A8MTB9 384 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms