RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 IGLV3-16A0A075B6K0 115 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 FITM1A5D6W6 292 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 FABP12A6NFH5 140 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 RFPL4AA6NLU0 287 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 RFPL4AL1F8VTS6 287 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 CALCBP10092 127 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 AADACP22760 399 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 PPOXP50336 477 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 IAH1Q2TAA2 248 aaPredicted RBP7.28□□□□□ -1.24
HMGB1-203ENST00000341423 PHYHD1Q5SRE7 291 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF529Q6P280 563 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 GLIPR1L1Q6UWM5 242 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 ADPRHL1Q8NDY3 354 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 OR4S2Q8NH73 311 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 PYDC1Q8WXC3 89 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 ST6GALNAC6Q969X2 333 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 SMAD5-AS1Q9Y6J3 95 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 ZGRF1Q86YA3 2104 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 TRGV2A0A075B6R0 118 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 ISG15P05161 165 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 CECR9P0C854 216 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF708P17019 499 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 TAS2R45P59539 299 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 ARPC1AQ92747 370 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 SRRQ9GZT4 340 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 RNPEPL1Q9HAU8 725 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 TMEM262E9PQX1 116 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 DVL1O14640 695 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 CRPP02741 224 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 SHBGP04278 402 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 SEMG1P04279 462 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 SHC1P29353 583 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 AMMECR1LQ6DCA0 310 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 OR2L13Q8N349 312 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 AMER3Q8N944 861 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 OR5AU1Q8NGC0 362 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 OR10S1Q8NGN2 331 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 UBE2L6O14933 153 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 IL5P05113 134 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 FGF2P09038 288 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 HIST1H1BP16401 226 aaKnown RBP7.27□□□□□ -1.25
HMGB1-203ENST00000341423 ZNF136P52737 540 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 HBG1P69891 147 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 HBG2P69892 147 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 MRPS34P82930 218 aaKnown RBP7.27□□□□□ -1.25
HMGB1-203ENST00000341423 ELP2Q6IA86 826 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 KIR3DL3Q8N743 410 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 OR8B12Q8NGG6 310 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 ASB4Q9Y574 426 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 FLVCR1Q9Y5Y0 555 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 TRIP11Q15643 1979 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 ZP1P60852 638 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 LSM6P62312 80 aaKnown RBP7.27□□□□□ -1.25
HMGB1-203ENST00000341423 TAGLNQ01995 201 aaKnown RBP7.27□□□□□ -1.25
HMGB1-203ENST00000341423 TCEAL1Q15170 157 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 BRD3OSQ6XYD6 125 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 STAC2Q6ZMT1 411 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 TMEM179BQ7Z7N9 219 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 OR51A4Q8NGJ6 313 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 PRSS27Q9BQR3 290 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 WSB1Q9Y6I7 421 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 OR2AT4A6NND4 320 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 IGHV3-13P01766 116 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 IGHV3-7P01780 117 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 PPP1R8Q12972 351 aaKnown RBP7.27□□□□□ -1.25
HMGB1-203ENST00000341423 PLPPR5Q32ZL2 321 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 TEX30Q5JUR7 227 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 UBE3DQ7Z6J8 389 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 C19orf24Q9BVV8 132 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 UFC1Q9Y3C8 167 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 PCYT1BQ9Y5K3 369 aaPredicted RBP7.27□□□□□ -1.25
HMGB1-203ENST00000341423 PLXNA1Q9UIW2 1896 aa7.27□□□□□ -1.25
HMGB1-203ENST00000341423 CDHR4A6H8M9 788 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 ACOD1A6NK06 481 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 HSD17B6O14756 317 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 SLC16A6O15403 523 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 REG1BP48304 166 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 VEGFCP49767 419 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 AESQ08117 197 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 HLXQ14774 488 aaPredicted RBP7.26□□□□□ -1.25
HMGB1-203ENST00000341423 NCMAPQ5T1S8 102 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 HAPLN4Q86UW8 402 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 ZNF420Q8TAQ5 688 aaPredicted RBP7.26□□□□□ -1.25
HMGB1-203ENST00000341423 DYNC2LI1Q8TCX1 351 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 C12orf43Q96C57 262 aaKnown RBP7.26□□□□□ -1.25
HMGB1-203ENST00000341423 NECAP2Q9NVZ3 263 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 METTL1Q9UBP6 276 aaKnown RBP7.26□□□□□ -1.25
HMGB1-203ENST00000341423 ICAM5Q9UMF0 924 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 COX7A2P2O60397 106 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 NR4A2P43354 598 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 ZNF141Q15928 474 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 PRSS57Q6UWY2 283 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 REC114Q7Z4M0 266 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 ANGPTL5Q86XS5 388 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 GCSAMQ8N6F7 178 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 POC1AQ8NBT0 407 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 LYNX1G3V0Z9 82 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 ARPC1BO15143 372 aaKnown RBP7.26□□□□□ -1.25
HMGB1-203ENST00000341423 FCGR3BO75015 233 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 AMY2AP04746 511 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms