RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 HLA-DQB1P01920 261 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 IL6RP08887 468 aaPredicted RBP1.09□□□□□ -2.24
LINC00643-201ENST00000334389 HSD17B1P14061 328 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 FPR3P25089 353 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 IL3RAP26951 378 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 LAP3P28838 519 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 ELK3P41970 407 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 OR3A4PP47883 348 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 MEOX2P50222 304 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 POLR2JP52435 117 aaKnown RBP1.09□□□□□ -2.24
LINC00643-201ENST00000334389 PRRX1P54821 245 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 ATP5IP56385 69 aaPredicted RBP1.09□□□□□ -2.24
LINC00643-201ENST00000334389 LINC00310P59036 64 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 ARPC4P59998 168 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 GRB2P62993 217 aaKnown RBP1.09□□□□□ -2.24
LINC00643-201ENST00000334389 BTN3A2P78410 334 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 ZNF460Q14592 562 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 QPRTQ15274 297 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 PSG3Q16557 428 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 POU2AF1Q16633 256 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 DUSP5Q16690 384 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 TATDN3Q17R31 274 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 KRTAP19-2Q3LHN2 52 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 CCDC92Q53HC0 331 aaPredicted RBP1.09□□□□□ -2.24
LINC00643-201ENST00000334389 ODF2Q5BJF6 829 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 ZNF880Q6PDB4 577 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 SPSB3Q6PJ21 355 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 EPGNQ6UW88 154 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 ZNF562Q6V9R5 426 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 DGAT2L6Q6ZPD8 337 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 ZNF833PQ6ZTB9 187 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 FRA10AC1Q70Z53 315 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 PRSS45Q7RTY3 260 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 GID4Q8IVV7 300 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 C10orf67Q8IYJ2 551 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 TMEM256Q8N2U0 113 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 SLC35F6Q8N357 371 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 OR5A2Q8NGI9 324 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 SPATA22Q8NHS9 363 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 NDNFQ8TB73 568 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 C16orf78Q8WTQ4 265 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 SCARB1Q8WTV0 552 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 PYROXD1Q8WU10 500 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 SPSB1Q96BD6 273 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 FMO2Q99518 471 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 PRPF18Q99633 342 aaKnown RBP1.09□□□□□ -2.24
LINC00643-201ENST00000334389 FOXB1Q99853 325 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 HOPXQ9BPY8 73 aaPredicted RBP1.09□□□□□ -2.24
LINC00643-201ENST00000334389 FUNDC2Q9BWH2 189 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 SLC25A19Q9HC21 320 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 TMBIM4Q9HC24 238 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 MRPS18AQ9NVS2 196 aaKnown RBP1.09□□□□□ -2.24
LINC00643-201ENST00000334389 RLIMQ9NVW2 624 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 CLEC5AQ9NY25 188 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 SLC2A8Q9NY64 477 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 LUZP4Q9P127 313 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 HSPB7Q9UBY9 170 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 ENOPH1Q9UHY7 261 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 POFUT2Q9Y2G5 429 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 RFNGQ9Y644 331 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 WSB1Q9Y6I7 421 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 CENPEQ02224 2701 aa1.09□□□□□ -2.24
LINC00643-201ENST00000334389 A0A0B4J293 547 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 ZC3H12DA2A288 527 aaKnown RBP1.08□□□□□ -2.24
LINC00643-201ENST00000334389 CCDC154A6NI56 674 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 ZSCAN5BA6NJL1 495 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP1.08□□□□□ -2.24
LINC00643-201ENST00000334389 K7N7A8 449 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 CXCR6O00574 342 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 ARPC3O15145 178 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 CFLARO15519 480 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 PRAMEF4O60810 478 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 UGT2B17O75795 530 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 OR4F21O95013 312 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 ABHD16AO95870 558 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 CHEK2O96017 543 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 CFDP00746 253 aaPredicted RBP1.08□□□□□ -2.24
LINC00643-201ENST00000334389 IFNB1P01574 187 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 IGKV1D-16P01601 117 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 IFNA4P05014 189 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 IFNA16P05015 189 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 NMBP08949 121 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 CD7P09564 240 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 ALDOCP09972 364 aaKnown RBP1.08□□□□□ -2.24
LINC00643-201ENST00000334389 MYOD1P15172 320 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 NPY1RP25929 384 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 RPL10P27635 214 aaKnown RBP1.08□□□□□ -2.24
LINC00643-201ENST00000334389 SAA4P35542 130 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 TALDO1P37837 337 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 CBX5P45973 191 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 MVDP53602 400 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 AQP5P55064 265 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 SMIM11AP58511 58 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 RAB4BP61018 213 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 HTD2P86397 168 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 PITPNAQ00169 270 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 SLAQ13239 276 aa1.08□□□□□ -2.24
LINC00643-201ENST00000334389 SRSF9Q13242 221 aaKnown RBP eCLIP1.08□□□□□ -2.24
LINC00643-201ENST00000334389 SLBPQ14493 270 aaKnown RBP eCLIP1.08□□□□□ -2.24
LINC00643-201ENST00000334389 PCLAFQ15004 111 aa1.08□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms