RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TMEM74BQ9NUR3 256 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 PLIN4Q96Q06 1357 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 A0A1W2PP18 115 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 GPANK1O95872 356 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 GHRHP01286 108 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 HBDP02042 147 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 PSG6Q00889 435 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 ZNF124Q15973 351 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 GUCA2BQ16661 112 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 TMEM177Q53S58 311 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 PLAG1Q6DJT9 500 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 PWWP2BQ6NUJ5 590 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 PNKDQ8N490 385 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 PEX11GQ96HA9 241 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 MRGPRX4Q96LA9 322 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 C18orf15Q96N68 181 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 WNT10AQ9GZT5 417 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 SLC26A1Q9H2B4 701 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 MYH8P13535 1937 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 IGSF1Q8N6C5 1336 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 NSG1A0A0A6YYJ2 146 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 NPIPB11E5RHQ5 1161 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 ACOT8O14734 319 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 INSIG1O15503 277 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 CDC14BO60729 498 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 HOXC4P09017 264 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 FAM157CP0CG43 387 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 ACP1P24666 158 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 TIA1P31483 386 aaKnown RBP eCLIP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 GP2P55259 537 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 KRTCAP3Q53RY4 240 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 APOBEC3FQ8IUX4 373 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 NEUROG1Q92886 237 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 CLDN23Q96B33 292 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 TM4SF18Q96CE8 201 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 CPEB1Q9BZB8 566 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 TWSG1Q9GZX9 223 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 FAM208AQ9UK61 1670 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 NFASCO94856 1347 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 GON4LQ3T8J9 2241 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 IGHV5-51A0A0C4DH38 117 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 A0A0G2JMM0 328 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 A0A1W2PPB8 328 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 KIR3DP1A8MWS1 328 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 CHST1O43916 411 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 LIMS3P0CW19 117 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 LIMS4P0CW20 117 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 MMP9P14780 707 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 C1QTNF12Q5T7M4 302 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 C16orf82Q7Z2V1 217 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 LYG2Q86SG7 212 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 SYT8Q8NBV8 401 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 KLK11Q9UBX7 282 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 MRPL33O75394 65 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 HPRT1P00492 218 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 SNRPCP09234 159 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 CDKN2BP42772 138 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 C2orf27AQ580R0 203 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 SP5Q6BEB4 398 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 STRADAQ7RTN6 431 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 LIMS2Q7Z4I7 341 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 LINC00346Q8IVM7 164 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 LRRC25Q8N386 305 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 OR10G4Q8NGN3 311 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 OR10G9Q8NGN4 311 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 OR10G7Q8NGN6 311 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 SSC4DQ8WTU2 575 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 ZNF107Q9UII5 783 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 CXCL14O95715 111 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 WNT2P09544 360 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 SEC11BP0C7V7 166 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 CLDN17P56750 224 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 ABHD17BQ5VST6 288 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 FAHD1Q6P587 224 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 ANKRD33Q7Z3H0 272 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 SAXO1Q8IYX7 474 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 DAZLQ92904 295 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 GNRHR2Q96P88 292 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 TSPAN32Q96QS1 320 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 ZPBPQ9BS86 351 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 RTL8AQ9BWD3 113 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 ATP7AQ04656 1500 aa6.83□□□□□ -1.32
LIMCH1-201ENST00000313860 NRKQ7Z2Y5 1582 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 CEP170BQ9Y4F5 1589 aaPredicted RBP6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 RING1Q06587 406 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 ABHD15Q6UXT9 468 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 LDLRAD3Q86YD5 345 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 PLXDC1Q8IUK5 500 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 MDS2Q8NDY4 140 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 CPEB3Q8NE35 698 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 LPPQ93052 612 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 COA4Q9NYJ1 87 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 MRC2Q9UBG0 1479 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 TRAV12-1A0A0B4J245 112 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 GAGE12BA1L429 117 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 C5orf49A4QMS7 147 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 RBFOX3A6NFN3 312 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 A8MT66 165 aa6.82□□□□□ -1.32
LIMCH1-201ENST00000313860 OR2H2O95918 312 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms