RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 AKR1C3P42330 323 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 PAX5Q02548 391 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 EDDM3AQ14507 147 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 GLYATL3Q5SZD4 288 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 MORN1Q5T089 497 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 PIP5KL1Q5T9C9 394 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 RASL11AQ6T310 242 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 SLC39A5Q6ZMH5 540 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 C6orf201Q7Z4U5 140 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 SPNS2Q8IVW8 549 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 UBALD2Q8IYN6 164 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 C11orf40Q8WZ69 217 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 LHX4Q969G2 390 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 SYNPO2LQ9H987 977 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 NAV3Q8IVL0 2385 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 A0A0D9SEW6 157 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 CCL22O00626 93 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 NDUFA2O43678 99 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 HOXB5P09067 269 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 SMUG1Q53HV7 270 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF787Q6DD87 383 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 CYHR1Q6ZMK1 362 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 TMEM217Q8N7C4 229 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 OR1L6Q8NGR2 347 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 OR4F5Q8NH21 305 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 RTN4IP1Q8WWV3 396 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-201ENST00000303395 MOGAT1Q96PD6 335 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 OR4F4Q96R69 305 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 TP53RKQ96S44 253 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 SOSTQ9BQB4 213 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 TMEM147Q9BVK8 224 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 TMEM30AQ9NV96 361 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF835Q9Y2P0 537 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 A0A1B0GV72 72 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 HIST1H1DP16402 221 aaKnown RBP4.7□□□□□ -1.66
SCN1A-201ENST00000303395 TCN2P20062 427 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 EMP1P54849 157 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 FABP9Q0Z7S8 132 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 OR2G6Q5TZ20 316 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 GPRIN1Q7Z2K8 1008 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 TTC9BQ8N6N2 239 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 WBP2Q969T9 261 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 GLIS2Q9BZE0 524 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-201ENST00000303395 SLC52A3Q9NQ40 469 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 CLEC5AQ9NY25 188 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 ONECUT1Q9UBC0 465 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 A4GNTQ9UNA3 340 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 NEU3Q9UQ49 428 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 TGIF2-C20orf24A0A0A6YYL0 155 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 PEX11BO96011 259 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 LIPFP07098 398 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 CA7P43166 264 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 CNN1P51911 297 aaKnown RBP4.7□□□□□ -1.66
SCN1A-201ENST00000303395 RPS16P62249 146 aaKnown RBP4.7□□□□□ -1.66
SCN1A-201ENST00000303395 LSM11P83369 360 aaKnown RBP eCLIP4.7□□□□□ -1.66
SCN1A-201ENST00000303395 Q6AWC8 147 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF813Q6ZN06 617 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 GALMQ96C23 342 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 GALNT14Q96FL9 552 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 MARS2Q96GW9 593 aaKnown RBP4.7□□□□□ -1.66
SCN1A-201ENST00000303395 SMOC1Q9H4F8 434 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 ATP23Q9Y6H3 246 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 BTAF1O14981 1849 aa4.7□□□□□ -1.66
SCN1A-201ENST00000303395 A0A087X0M5 115 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 A0A1B0GX30 115 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 RBFOX3A6NFN3 312 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 FAM90A9PA6NNJ1 464 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 C1QTNF9BB2RNN3 333 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 FOXD2O60548 495 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-201ENST00000303395 SIX6O95475 246 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 STATHP02808 62 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 EDN3P14138 238 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 SSTR2P30874 369 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 NTSR1P30989 418 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 JOSD1Q15040 202 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF79Q15937 498 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 LINC00303Q3SY05 128 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 DEFB134Q4QY38 66 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 Q56UQ5 140 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 FBXO48Q5FWF7 155 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF429Q86V71 674 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 OR5D18Q8NGL1 313 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 VSTM2AQ8TAG5 236 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 ADAMTS17Q8TE56 1095 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 RSRP1Q9BUV0 290 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 TWSG1Q9GZX9 223 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 MRPL15Q9P015 296 aaKnown RBP4.69□□□□□ -1.66
SCN1A-201ENST00000303395 CLEC18AA5D8T8 446 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 SNAI1O95863 264 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-201ENST00000303395 FUT3P21217 361 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 PTNP21246 168 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 CTSCP53634 463 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 CST6Q15828 149 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 NNATQ16517 81 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 CLEC18CQ8NCF0 446 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 PHLDA1Q8WV24 401 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-201ENST00000303395 TMED6Q8WW62 240 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 FBXO4Q9UKT5 387 aa4.69□□□□□ -1.66
SCN1A-201ENST00000303395 MRPS2Q9Y399 296 aaKnown RBP4.69□□□□□ -1.66
SCN1A-201ENST00000303395 TIMM10BQ9Y5J6 103 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms