RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ABHD12Q8N2K0 398 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 LINC00482Q8N8I6 264 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 CCDC54Q8NEL0 328 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 OR4P4Q8NGL7 312 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 TRMT10AQ8TBZ6 339 aaKnown RBP11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 RBM14Q96PK6 669 aaKnown RBP11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 PRRG3Q9BZD7 231 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 GAL3ST2Q9H3Q3 398 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 PAPOLBQ9NRJ5 636 aaKnown RBP11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 MTCH1Q9NZJ7 389 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 COPS3Q9UNS2 423 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 TMEM82A0PJX8 343 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 FUOMA2VDF0 154 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 LEUTXA8MZ59 168 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 PRR32B1ATL7 298 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 MGST3O14880 152 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 HAND1O96004 215 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 CYB5AP00167 134 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 SERPINA3P01011 423 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 NHLRC4P0CG21 123 aaPredicted RBP11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 CCL1P22362 96 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 CXCR4P61073 352 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 CCDC144NLQ6NUI1 221 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 TRAPPC6BQ86SZ2 158 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 ADGRG5Q8IZF4 528 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 OSR2Q8N2R0 312 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 EMG1Q92979 244 aaKnown RBP11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 ASB9Q96DX5 294 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 NSL1Q96IY1 281 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 APOL4Q9BPW4 351 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 CADM1Q9BY67 442 aaKnown RBP11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 TVP23BQ9NYZ1 205 aa11.78□□□□□ -0.52
CCDC88B-201ENST00000301897 TRGV10A0A0A0MS01 117 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 OOSP1A8MZH6 123 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 ZNF670-ZNF695F2Z2N8 137 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 HOXD3P31249 432 aaPredicted RBP11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 CDC42P60953 191 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 ZNF91Q05481 1191 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 SPIN3Q5JUX0 258 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 TMEM236Q5W0B7 351 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 HEPN1Q6WQI6 88 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 SLC25A26Q70HW3 274 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 SLAMF9Q96A28 289 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 C10orf35Q96D05 121 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 BORCS8Q96FH0 119 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 TTTY10Q9BZA0 68 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 CLN6Q9NWW5 311 aa11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 H2AFY2Q9P0M6 372 aaPredicted RBP11.77□□□□□ -0.53
CCDC88B-201ENST00000301897 DNAH9Q9NYC9 4486 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 TRBV2A0A0J9YWF9 115 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 PSMB11A5LHX3 300 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 A6NIN4 97 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 F8VVB4 439 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 F8VWA3 439 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 IGHA1P01876 353 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 PRKACGP22612 351 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 CD34P28906 385 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 MNDAP41218 407 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 GP2P55259 537 aaKnown RBP11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 P2RX3P56373 397 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 ZNF146Q15072 292 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 MEPCEQ7L2J0 689 aaKnown RBP11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 MRPL41Q8IXM3 137 aaKnown RBP11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 SLC35F2Q8IXU6 374 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 FAM58AQ8N1B3 248 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 TPRX1Q8N7U7 411 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 CHST5Q9GZS9 411 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 CHST6Q9GZX3 395 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 PCDHB16Q9NRJ7 776 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 TAS2R3Q9NYW6 316 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 HHLA2Q9UM44 414 aa11.76□□□□□ -0.53
CCDC88B-201ENST00000301897 AQP12BA6NM10 295 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 SYT7O43581 403 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 IGLV1-47P01700 117 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 KRT8P05787 483 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 FAM106CPP0CH98 169 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 CDK2P24941 298 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 CD24P25063 80 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 THBS3P49746 956 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 CRISP1P54107 249 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 PRRX1P54821 245 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 GYS2P54840 703 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 UBE2V2Q15819 145 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 C9orf152Q5JTZ5 239 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 AQP12AQ8IXF9 295 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 HS3ST5Q8IZT8 346 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 DNAAF1Q8NEP3 725 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 OR52N4Q8NGI2 321 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 CHPT1Q8WUD6 406 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 CANT1Q8WVQ1 401 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 PP6455Q8WZ26 134 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 CORO2AQ92828 525 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 ZNF649Q9BS31 505 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 ADI1Q9BV57 179 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 ZFP57Q9NU63 452 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 MRM2Q9UI43 246 aaKnown RBP11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 MOB4Q9Y3A3 225 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 HSPE1-MOB4S4R3N1 261 aa11.75□□□□□ -0.53
CCDC88B-201ENST00000301897 IGKV1-27A0A075B6S5 117 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 TOR1AO14656 332 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms